PVS-Sleep-Project

This repository includes the custom code for analyzing the raw data in:

• Sleep cycle-dependent vascular dynamics and the predicted effects on perivascular cerebrospinal fluid flow and solute transport. Laura Bojarskaite, Alexandra Vallet, Daniel M. Bjørnstad, Kristin M. Gullestad Binder, Céline Cunen, Kjell Heuser, Miroslav Kuchta, Kent-Andre Mardal, Rune Enger. For derived data and analyses please see the publication.

Downloading raw data

To download raw data please download, unzip and run https://github.com/GliaLab/PVS-Sleep-Project/blob/master/download_files.sh.zip

Analyses

This repository contains primarily the Begonia toolbox with some minor modifications. Please see the original publication for detailed instructions:

• Begonia—A Two-Photon Imaging Analysis Pipeline for Astrocytic Ca²⁺ Signals, Daniel M. Bjørnstad, Knut S. Åbjørsbråten, Eivind Hennestad, Céline Cunen, Gudmund Horn Hermansen, Laura Bojarskaite, Klas H. Pettersen, Koen Vervaeke, Rune Enger, https://doi.org/10.3389/fncel.2021.681066