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@GlobalPathogenAnalysisService

GPAS

The Global Pathogen Analysis Service

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  1. read-it-and-keep read-it-and-keep Public

    Read contamination removal

    C 24 3

  2. gpas-cli gpas-cli Public archive

    The CLI client for GPAS SC2

    Python 5 2

  3. gpas-covid-testsets gpas-covid-testsets Public

    A series of SARS-CoV-2 development testsets for the different pipelines available in GPAS

    Jupyter Notebook 1 2

  4. gpas-uploader gpas-uploader Public archive

    Sequencing data upload client for GPAS users

    Python 1

  5. gpas-testing gpas-testing Public

    Create perfect FASTQ files for the SARS-CoV-2 WHO lineages for use in testing

    Python 1

  6. gpas-user-tools gpas-user-tools Public

    Collection of tools to help users upload, process and

    Python 1

Repositories

Showing 10 of 14 repositories
  • SARS-COV-2_environments Public
    GlobalPathogenAnalysisService/SARS-COV-2_environments’s past year of commit activity
    Dockerfile 0 MIT 0 0 0 Updated Sep 15, 2024
  • OCI-SuperDelete Public Forked from AnykeyNL/OCI-SuperDelete

    Delete all OCI resources in a compartment

    GlobalPathogenAnalysisService/OCI-SuperDelete’s past year of commit activity
    Python 0 UPL-1.0 37 0 0 Updated Jun 17, 2024
  • gpas-user-tools Public

    Collection of tools to help users upload, process and

    GlobalPathogenAnalysisService/gpas-user-tools’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Apr 12, 2024
  • read-it-and-keep Public

    Read contamination removal

    GlobalPathogenAnalysisService/read-it-and-keep’s past year of commit activity
    C 24 MIT 3 0 0 Updated Jan 24, 2024
  • gpas-cli Public archive

    The CLI client for GPAS SC2

    GlobalPathogenAnalysisService/gpas-cli’s past year of commit activity
    Python 5 2 26 0 Updated Nov 18, 2023
  • sp3-oci-rm Public archive

    Resource Manager Stack and Deployment Scripts for building SP3 cluster on OCI

    GlobalPathogenAnalysisService/sp3-oci-rm’s past year of commit activity
    HCL 0 4 0 0 Updated Mar 22, 2023
  • gpas-testing Public

    Create perfect FASTQ files for the SARS-CoV-2 WHO lineages for use in testing

    GlobalPathogenAnalysisService/gpas-testing’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 20, 2023
  • gpas-uploader Public archive

    Sequencing data upload client for GPAS users

    GlobalPathogenAnalysisService/gpas-uploader’s past year of commit activity
    Python 1 BSD-3-Clause 0 3 0 Updated Jun 23, 2022
  • gpas_test_scripts Public
    GlobalPathogenAnalysisService/gpas_test_scripts’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 14, 2022
  • nextflow Public Forked from nextflow-io/nextflow

    A DSL for data-driven computational pipelines

    GlobalPathogenAnalysisService/nextflow’s past year of commit activity
    Groovy 0 Apache-2.0 623 0 0 Updated Apr 6, 2022
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