test data set

[EricDeveaud]

Hi,

while trying install nucleoatac on our central HPC cluster I wasn't able to run a functional test (ie, post install before delivering it to our users) of the freshly installed nucleoatac. because of the lack of the necessary fastafile as mentioned on the doc.
I was trying to run the following command:

nucleoatac run --bed <bedfile> --bam <bamfile> --fasta <fastafile> --out <output_basename>

with the example bead bam files provided, but I was missing the fastafile.

can you provide one or the reference to the one used

regards

Eric

[AliciaSchep]

The one that would be used is sacCer3 from UCSC genome browser. I should add it to the example folder.

[EricDeveaud]

thanks
Eric