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Update README.md
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GuoliangLi-HZAU committed Aug 17, 2019
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Expand Up @@ -64,7 +64,8 @@ Before excuting the ChIA-PET Tool V3, you need to create genome index by BWA ref
Other options:
--start_step: start with which step, 1: linker filtering; 2: mapping to genome; 3: removing redundancy; 4:
categorization of PETs; 5: peak calling; 6: interaction calling; 7: visualizing, default: 1"
--output: specifies the directory to store the output data from ChIA-PET Tool V3, please specify the absolute path of output directory.
--output: specifies the directory to store the output data from ChIA-PET Tool V3,
note: please specify the absolute path of output directory.
--prefix: specifies the prefix of all the output files, default: out.
--minimum_tag_length: Specifies the minimum tag length. Tag is the sequence after linker removal. This parameter
is better to be set above 18bp. Default: 18.
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