extract-preprints #1473
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name: extract-preprints | |
on: | |
schedule: | |
# Run at 01:30 every day | |
- cron: '30 1 * * *' | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
workflow_dispatch: | |
jobs: | |
extract-papers: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v2 | |
- name: Set up Python 3.8 | |
uses: actions/setup-python@v1 | |
with: | |
python-version: 3.8 | |
- name: Install Python dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install flake8 pytest | |
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
- name: Extract COVID-19 Preprints | |
env: | |
PASSPHRASE: ${{ secrets.PASSPHRASE }} | |
run: | | |
mkdir $HOME/secrets | |
gpg --quiet --batch --yes --decrypt --passphrase="$PASSPHRASE" --output $HOME/secrets/contacts.csv data/contacts.csv.gpg | |
python3 preprint-extractor.py | |
- name: Commit extracts to master branch | |
uses: stefanzweifel/git-auto-commit-action@v4.1.6 | |
with: | |
commit_message: Commit new papers and preprints | |
branch: ${{ github.head_ref }} | |
commit_user_name: Susheel Varma | |
commit_user_email: susheel.varma@hdruk.ac.uk | |
commit_author: Susheel Varma <susheel.varma@hdruk.ac.uk> | |
- name: Commit extracts to gh-pages branch | |
uses: stefanzweifel/git-auto-commit-action@v4.1.6 | |
with: | |
commit_message: Commit new papers and preprints | |
branch: gh-pages | |
commit_user_name: Susheel Varma | |
commit_user_email: susheel.varma@hdruk.ac.uk | |
commit_author: Susheel Varma <susheel.varma@hdruk.ac.uk> |