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A mixed C++ and Python software suite for analyzing spiking neural data.
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HRLAnalysis/HRLAnalysis
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Developed as part of the DARPA SyNAPSE program, the HRLAnalysis package was initially created as an implementation of off-line visualization of spiking and network data for use with HRLSim(TM). To balance efficiency with usability, the extraction and analysis of the simulation data is performed in C++ and the plotting and further manipulation is handled in Python through the Boost package. With this, users get the performance benefits of C++ but also the feature rich and syntactically simple interface of Python. In addition, users can take advantage of the extensive libraries available to Python for further manipulation and visualization of the results. HRLAnalysis is currently supported by Corey M. Thibeault and Michael J. O'Brien. The initially design and development was completed by Corey M. Thibeault. The membrane voltage analysis and extra plotting functionality was developed by Micheal O'Brien. See hrlAnalysis.pdf and the full paper(currently in submission) for more details. License: HRLAnalysis(TM) Software License - Version 1.0 - August 27th, 2013 Permission is hereby granted, free of charge, to any person or organization obtaining a copy of the software and accompanying documentation covered by this license (the "Software") to use, reproduce, display, distribute, execute, and transmit the Software, and to prepare derivative works of the Software, and to permit third-parties to whom the Software is furnished to do so, all subject to the following: The copyright notices in the Software and this entire statement, including the above license grant, this restriction and the following disclaimer, must be included in all copies of the Software, in whole or in part, and all derivative works of the Software, unless such copies or derivative works are solely in the form of machine-executable object code generated by a source language processor. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE, INCLUDING BUT NOT LIMITED TO THE COMPATIBILITY OF THIS LICENSE WITH OTHER SOFTWARE LICENSES. The authors gratefully acknowledge the support for this work by Defense Advanced Research Projects Agency (DARPA) SyNAPSE grant HRL0011-09-C-001. The views, opinions, and/or findings contained in this source are those of the authors and should not be interpreted as representing the official views or policies, either expressed or implied, of the DARPA or the Department of Defense. Approved for public release, distribution unlimited.
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A mixed C++ and Python software suite for analyzing spiking neural data.
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