Merge pull request #79 from mobiusklein/master #119
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name: Python tests | |
on: push | |
jobs: | |
test: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest, windows-latest, macos-latest] | |
python-version: ["3.8", "3.9", "3.10"] | |
steps: | |
- uses: actions/checkout@v2 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install flake8 pytest | |
- name: Lint with flake8 | |
run: | | |
# stop the build if there are Python syntax errors or undefined names | |
flake8 implementations/python --count --select=E9,F63,F7,F82 --show-source --statistics | |
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
flake8 implementations/python --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
- name: Install python package | |
run: | | |
pip install --editable implementations/python[test] | |
- name: Test with pytest | |
env: | |
MZSPECLIB_PEAK_ANNOTATION_SCHEMA_LOCATION: "specification/peak-annotation-format/annotation-schema.json" | |
run: | | |
pytest -r a |