This repository provides the code for Echo2Pheno: A deep learning application to uncover echocardiographic phenotypes. Echo2Pheno consists of two modules:
- Echo2Pheno Module I includes two neural networks, one for assessing the quality of acquisition of echocardiograms and the second for segmenting the Left Ventricle Inner Diameter traces. From a combination of these various heart features of the mouse in high quality of acquisition regions are extracted and can be used for Module II.
- Echo2Pheno Module II incorporates a statistical nonparametric hypothesis-testing module to investigate whether the mutant and control measurements of a study are drawn from the same statistical distribution.
The code has been tested with Python 3.7 and 3.9 environments. To install the necessary packages for Echo2Pheno run:
pip install -r requirements.txt
If you are using conda you may need to first install pip by: conda install pip.