PythonTools
MABE includes a collection of Python Tools used for post processing of data.
In order to run all of the tools you should have
- python 3.0 or later - https://www.python.org/
- pandas - http://pandas.pydata.org/
- matplotlib - http://matplotlib.org/
Running python tools (or any python script) can be accomplished on the command line with:
python [name of program].py
All of the Python Tools include -h options with detailed usage messages.
home
welcome
MABE Parameter Widget
Installation and quick start
license
citations
release notes
developer contributions
consistency testing
Using MABE
Using Settings Files
Output Files
Creating Graphs with python
MABE framework
Defining Update
Brains
Markov Brain
Neuron Gate
Wire Brain
Human Brain
ConstantValues Brain
CGP Brain
Genetic Programing Brain
Artificial Neural Networks
Brains Structure and Connectome
Genomes
Circular Genome
Multi Genome
Genome Handlers
Genome Value Conversions
Organisms
Groups
Archivists
popFileColumns
Optimizers
Lexicase Optimizer
Worlds
Berry World
ComplexiPhi World
MultiThreadTemplate World
Utilities
DataMap
Parameters
Parameters Name Space
Adding Parameters to Code
ParametersTable
MTree
sequence function
Population Loading
PythonTools
MBuild
MGraph
MQ
findRelatedness
generatePhylogeny
Information Theory Tools
Brain States and Life Times
TimeSeries
Entropy Functions
Smearing
Fragmentation
State to State
Brain Infomation Tools
ProcessingTools