initial jbook commit

README.md

@@ -1,4 +1,5 @@
-# HydroSAR
+# Start Here
+
 ## About the HydroSAR Project
 HydroSAR is a project funded by the NASA Applied Sciences Program focused on the development of algorithms for the monitoring of hydrological hazards using data from Synthetic Aperture Radar (SAR) sensors. Algorithms are being developed for the following SAR-derived products:
 - **RTC30:** Time series of Radiometrically Terrain Corrected (RTC) SAR images provided at 30 m resolution.

_config.yml

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+title: HydroSAR Jupyter Book
+author: The HydroSAR Team
+logo: hydrosar_logo.jpeg
+
+# Force re-execution of notebooks on each build.
+# See https://jupyterbook.org/content/execute.html
+execute:
+  execute_notebooks: 'off'
+
+# Define the name of the latex output file for PDF builds
+latex:
+  latex_documents:
+    targetname: book.tex
+
+# Add a bibtex file so that we can create citations
+bibtex_bibfiles:
+  - references.bib
+
+# Information about where the book exists on the web
+repository:
+  url: https://github.com/HydroSAR/HydroSAR  # Online location of your book
+  path_to_book: .  # Optional path to your book, relative to the repository root
+  branch: main  # Which branch of the repository should be used when creating links (optional)
+
+# Add GitHub buttons to your book
+# See https://jupyterbook.org/customize/config.html#add-a-link-to-your-repository
+html:
+  use_issues_button: true
+  use_repository_button: true

_toc.yml

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+format: jb-book
+root: README
+parts:
+  - caption: Start Here
+    chapters:
+      - file: README.md
+  - caption: Environments
+    chapters:
+      - file: notebooks/a_Software_Environments.ipynb
+  - caption: Data Access
+    chapters:
+      - file: notebooks/1-Prepare_Data_Stack.ipynb
+

environments/fierpy_env.yml

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+name: fierpy
+channels: 
+  - conda-forge
+dependencies:
+  - eofs
+  - gdal
+  - geoglows
+  - ipyfilechooser
+  - ipympl
+  - jupyterlab
+  - ipywidgets
+  - keras
+  - matplotlib
+  - numpy
+  - opensarlab_lib
+  - pandas
+  - rioxarray
+  - scikit-learn
+  - scipy
+  - xarray
+  - pip
+  - pip:
+    - git+https://github.com/servir/fierpy.git
+    - tensorflow
+

environments/hydrosar_hand_env.yml

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+name: hydrosar_hand
+channels: 
+  - conda-forge
+dependencies:
+  - python==3.11
+  - affine
+  - astropy
+  - fiona
+  - gdal
+  - geopandas
+  - ipympl
+  - jupyterlab
+  - ipyfilechooser
+  - ipywidgets
+  - pip
+  - pyproj
+  - pysheds
+  - rasterio
+  - scipy
+  - shapely
+  - tqdm

environments/hydrosar_rtc_era5_env.yml

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+name: hydrosar_rtc_era5
+channels: 
+  - conda-forge
+dependencies:
+  - cdsapi
+  - gdal
+  - hyp3_sdk
+  - ipyfilechooser
+  - ipympl
+  - jupyterlab
+  - matplotlib
+  - numpy
+  - opensarlab_lib
+  - pandas
+  - pip
+  - pyproj
+  - rasterio
+  - xarray
+  - pip:
+    - url_widget

environments/hydrosar_water_mask_env.yml

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+name: hydrosar_water_mask
+channels: 
+  - conda-forge
+dependencies:
+  - python==3.11
+  - gdal
+  - ipyfilechooser
+  - ipympl
+  - jupyterlab
+  - matplotlib
+  - numpy  
+  - opensarlab_lib
+  - pandas
+  - pip
+  - pyproj
+  - rasterio
+  - scikit-fuzzy