Releases
v0.2.14
Ensembles:
Save and load weights and sigmay (#876 )
Define relative cutoff (#855 )
PEtab:
Pass problem kwargs via petab importer (#874 )
Use benchmark-models-petab
instead of manual download (#915 )
Use fake RData in in prediction_to_petab_measurement_df (#925 )
Optimize:
Fides: Include message according to exitflag (#878 )
Sampling:
Visualization:
Fix waterfall plot limits for non-offsetted log-plots (#891 )
Plot unflattened model fit from flattened PEtab problems (#914 )
Added the offset value to waterfall plot for better intuitive understanding (#910 , #945 )
Visualize parameter correlation (#888 )
History and storage:
Fix history-result reconstruction mismatch (#902 )
Move history to own module (#903 )
Remove chi2, schi2 except for history convenience function (#904 )
Clean up history hierarchy (#908 )
Fix read_result
with history (#907 )
Improve hdf5 history file lock (#909 , #921 )
Fix message in check_overwrite
(#894 )
Deactivate automatic saving (#930 , #932 )
Allow problem=None in read_result_from_file (#936 )
Remove superfluous get_or_create_group (#937 )
Extract read_history_from_file from read_result_from_file (#939 )
Select: use model ID in save postprocessor filename, by default (#943 )
Select:
Clean up use of minimize_options
in model problem (#918 )
User-supplied method to produce pyPESTO problem (#884 )
Report, and binary model ID post-processors (#900 )
Move method.py functionalities to ui.py in petab_select (#919 )
Objective and Result:
Julia objective (#927 )
Fix set of keys to aggregate results in aggregated objective (#883 )
Nicer OptimizeResult.summary
(#895 , #916 , #935 , #942 , )
Fix disjoint IDs check in OptimizerResult.append
(#922 )
Fix OptimizeResult pickling (#953 )
General:
Remove version from CITATION.cff
(#887 )
Fix CI and docs (#892 , #893 )
Literal typehints for mode
(#899 )
Fix pandas deprecation warning (#896 )
Document NEP 29 (time-window based python support) (#905 )
Fix get_for_key
deprecation warning (#906 )
Fix multiple warnings from existing AMICI model (#912 )
Fix warning from AMICI fixed overrides (#912 )
Fix flaky test CRFunModeHistoryTest.test_trace_all
(#917 )
Fix novel B024 ABC without abstract methods (#923 )
Improve API docs and add overview notebook (#911 )
Fix typos (#926 )
Fix julia tests (#929 , #933 )
Fix flaky test_mpipoolengine (#938 )
More informative test IDs in test_optimize (#940 )
Speed-up import via lazy imports (#946 )
You can’t perform that action at this time.