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DOI: NullPointerException when trying to view dataset created in a dataverse that was created via API #1140

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pdurbin opened this issue Nov 18, 2014 · 4 comments
Closed

DOI: NullPointerException when trying to view dataset created in a dataverse that was created via API #1140

pdurbin opened this issue Nov 18, 2014 · 4 comments
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@kcondon
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Feature: Metadata Type: Bug a defect
Milestone
Beta 9 - Datavers...

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@pdurbin
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pdurbin commented Nov 18, 2014

I showed this to @sekmiller and he said he'd fix it. I'm getting a NullPointerException at just after creating a dataset in a dataverse I created via the API. (I'm on http://localhost:8080/dataset.xhtml?id=10&versionId=1 )

He said when you create a dataverse in the GUI the columns authority, protocol, doiprovider and doishouldercharacter are populated from the parent dataverse.

The fix will be to move this code from the GUI code to deeper into the system so we get the same behavior when dataverses are created via the API.

[2014-11-18T10:53:21.022-0500] [glassfish 4.0] [WARNING] [] [javax.enterprise.resource.webcontainer.jsf.lifecycle] [tid: _ThreadID=20 _ThreadName=http-listener-1(3)] [timeMillis: 1416326001022] [levelValue: 900] [[
  #{DatasetPage.init}: java.lang.NullPointerException
javax.faces.FacesException: #{DatasetPage.init}: java.lang.NullPointerException
    at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:118)
    at javax.faces.component.UIViewAction.broadcast(UIViewAction.java:559)
    at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:790)
    at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1282)
    at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:81)
    at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:101)
    at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:198)
    at javax.faces.webapp.FacesServlet.service(FacesServlet.java:646)
    at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
    at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:253)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
    at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:205)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316)
    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
    at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)
    at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)
    at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)
    at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:357)
    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:260)
    at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:188)
    at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:191)
    at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:168)
    at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:189)
    at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114)
    at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
    at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:838)
    at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:113)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:115)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:55)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135)
    at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:564)
    at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:544)
    at java.lang.Thread.run(Thread.java:744)
Caused by: javax.faces.el.EvaluationException: java.lang.NullPointerException
    at javax.faces.component.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:101)
    at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:102)
    ... 42 more
Caused by: java.lang.NullPointerException
    at edu.harvard.iq.dataverse.Dataset.getPersistentURL(Dataset.java:108)
    at edu.harvard.iq.dataverse.DatasetVersion.getCitation(DatasetVersion.java:528)
    at edu.harvard.iq.dataverse.Dataset.getCitation(Dataset.java:321)
    at edu.harvard.iq.dataverse.DatasetPage.init(DatasetPage.java:472)
    at edu.harvard.iq.dataverse.DatasetPage$Proxy$_$$_WeldClientProxy.init(Unknown Source)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at com.sun.el.parser.AstValue.invoke(AstValue.java:275)
    at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:304)
    at org.jboss.weld.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
    at org.jboss.weld.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
    at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:105)
    at javax.faces.component.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:87)
    ... 43 more
]]

[2014-11-18T10:53:21.025-0500] [glassfish 4.0] [WARNING] [] [javax.enterprise.web] [tid: _ThreadID=20 _ThreadName=http-listener-1(3)] [timeMillis: 1416326001025] [levelValue: 900] [[
  StandardWrapperValve[Faces Servlet]: Servlet.service() for servlet Faces Servlet threw exception
java.lang.NullPointerException
    at edu.harvard.iq.dataverse.Dataset.getPersistentURL(Dataset.java:108)
    at edu.harvard.iq.dataverse.DatasetVersion.getCitation(DatasetVersion.java:528)
    at edu.harvard.iq.dataverse.Dataset.getCitation(Dataset.java:321)
    at edu.harvard.iq.dataverse.DatasetPage.init(DatasetPage.java:472)
    at edu.harvard.iq.dataverse.DatasetPage$Proxy$_$$_WeldClientProxy.init(Unknown Source)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:606)
    at com.sun.el.parser.AstValue.invoke(AstValue.java:275)
    at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:304)
    at org.jboss.weld.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
    at org.jboss.weld.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
    at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:105)
    at javax.faces.component.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:87)
    at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:102)
    at javax.faces.component.UIViewAction.broadcast(UIViewAction.java:559)
    at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:790)
    at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1282)
    at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:81)
    at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:101)
    at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:198)
    at javax.faces.webapp.FacesServlet.service(FacesServlet.java:646)
    at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
    at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:253)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
    at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:205)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)
    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316)
    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)
    at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)
    at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)
    at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)
    at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:357)
    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:260)
    at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:188)
    at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:191)
    at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:168)
    at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:189)
    at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136)
    at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114)
    at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)
    at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:838)
    at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:113)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:115)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:55)
    at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135)
    at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:564)
    at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:544)
    at java.lang.Thread.run(Thread.java:744)
@pdurbin pdurbin added this to the Beta 9 - Dataverse 4.0 milestone Nov 18, 2014
@pdurbin pdurbin added the Type: Bug a defect label Nov 18, 2014
@sekmiller sekmiller assigned kcondon and unassigned sekmiller Nov 18, 2014
@sekmiller
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Fix Checked in 11-18. Build and DB drop required for testing

@kcondon
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kcondon commented Nov 21, 2014

@pdurbin Which API were you using to create the dataset?

@pdurbin
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pdurbin commented Nov 21, 2014

Which API were you using to create the dataset?

It was creating the dataverse via API that was the problem. Then you create a dataset in the GUI.

@kcondon
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kcondon commented Nov 22, 2014

I am able to view a dataset created through the GUI in a dataverse created through the native API.
Closing.

@kcondon kcondon closed this as completed Nov 22, 2014
@nwoodward nwoodward mentioned this issue Feb 2, 2021
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Labels
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Beta 9 - Dataverse 4.0
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