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Optimisation in graph traversal for ISA-TAB serialisation #403

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merged 6 commits into from
Jul 7, 2021

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@terazus terazus commented Jun 30, 2021

This PR refactors the way the process sequence graph is built for both Study and Assay Table. The graph now only uses identifiers instead of the full objects.

This optimisation tremendously improves the serialisation performance of isatab.dump() and associated functions (three to four orders of magnitude for datasets with thousands/tens of thousands of samples)

@terazus terazus requested a review from proccaserra June 30, 2021 11:47
@Zigur Zigur changed the title Dom massi improve graph Optimisation in graph traversal for ISA-TAB serialisation Jul 1, 2021
@Zigur Zigur merged commit 7949765 into master Jul 7, 2021
@proccaserra proccaserra deleted the DomMassiImproveGraph branch February 22, 2022 16:37
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