updated the linkback

ISUgenomics · Apr 30, 2019 · d656b6c · d656b6c
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diff --git a/dataAnalysis/GenomeAnnotation/annotation_and_assembly_index.md b/dataAnalysis/GenomeAnnotation/annotation_and_assembly_index.md
@@ -31,8 +31,10 @@ header:
 ### Tools for assessing the quality of a Genome Assembly
 
   * [GenomeScope to Estimate Genome Size](../GenomeAssembly/genomescope.md)
-  * [Genome Scaffolding Using Synteny with Pyscaf](../GenomeAssembly/Pyscaf_Synteny_Scaffolding.md)
+
+### Tools for Scaffolding assemblies
   * [Hi-C scaffolding](../GenomeAssembly/Hybrid/Scaffolding_with_HiC_Juicer.md)
+  * [Genome Scaffolding Using Synteny with Pyscaf](../GenomeAssembly/Pyscaf_Synteny_Scaffolding.md)
 
 ### Genetic Map Construction
 

diff --git a/dataAnalysis/GenomeAssembly/GenomeAssemblyIntro.md b/dataAnalysis/GenomeAssembly/GenomeAssemblyIntro.md
@@ -1 +1,6 @@
 #Genome Assembly Introduction
+
+
+---
+
+* [Back to the Assembly and Annotation Index page](../GenomeAnnotation/annotation_and_assembly_index.md)
diff --git a/dataAnalysis/GenomeAssembly/Pyscaf_Synteny_Scaffolding.md b/dataAnalysis/GenomeAssembly/Pyscaf_Synteny_Scaffolding.md
@@ -349,4 +349,4 @@ So 108 scaffolds put into chromosome 1, 81 into chromosome 2, 43 into chromosome
 
 ---
 
-* [Back to the Assembly and Annotation Index page](../../GenomeAnnotation/annotation_and_assembly_index.md)
+* [Back to the Assembly and Annotation Index page](../GenomeAnnotation/annotation_and_assembly_index.md)
diff --git a/dataAnalysis/GenomeAssembly/genomescope.md b/dataAnalysis/GenomeAssembly/genomescope.md
@@ -106,7 +106,7 @@ Then export the kmer count histogram
 
 That file can be processed by running GenomeScope online to generate the figures described above.
 
-- [Genome Scope](http://qb.cshl.edu/genomescope/)
+- [GenomeScope](http://qb.cshl.edu/genomescope/)
 
 
 
@@ -140,4 +140,4 @@ For more information on how GenomeScope works, check out this poster and supplem
 
 ---
 
-* [Back to the Assembly and Annotation Index page](../../GenomeAnnotation/annotation_and_assembly_index.md)
+* [Back to the Assembly and Annotation Index page](../GenomeAnnotation/annotation_and_assembly_index.md)