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INSTALL
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INSTALL
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## Isaac Genome Alignment Software
## Copyright (c) 2010-2017 Illumina, Inc.
## All rights reserved.
##
## This software is provided under the terms and conditions of the
## GNU GENERAL PUBLIC LICENSE Version 3
##
## You should have received a copy of the GNU GENERAL PUBLIC LICENSE Version 3
## along with this program. If not, see
## <https://github.com/illumina/licenses/>.
Installing the Isaac Genome Alignment Software
==============================================
Prerequisites:
--------------
- gnuplot (>= 4.0) (required during the execution)
- libnuma (if --with-numa is used)
- libz
- gcc (>= 4.7.3), for compilation
- markdown tool will be used if available to generate html user manual
Building on Linux:
------------
Isaac _must_ be built outside of the source directory. The steps are the usual
configure/make/make install.
mkdir Isaac-build
cd Isaac-build
/path/to/Isaac/src/configure --prefix=/path/to/Isaac-install
make
make install
For additional options:
/path/to/Isaac/src/configure --help
Building on Windows:
--------------------
Install 64-bit Windows (Windows 7 or higher)
Install Visual Studio 2015
Install Intel C++ Compiler 16.0
Install latest CMake - cmake.org/download
Goto main isaac directory
mkdir Isaac-build
cd Isaac-build
cmake -G"Visual Studio 14 2015 Win64" -T"Intel C++ Compiler 16.0" -DiSAAC_PREFIX=isaac-install -DCMAKE_BUILD_TYPE=RelWithDebInfo /path/to/iSAAC/src
make
make install
For building from within Visual Studio IDE
------------------------------------------
Open iSAAC.sln in Visual Studio
Build from Visual Studio
After Visual Studio build completes, running 'make install' is still required from command line