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Problem with Retrieve variants under a gnomAD allele frequency threshold #21

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JFL9421 opened this issue Jul 18, 2022 · 0 comments
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@JFL9421
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JFL9421 commented Jul 18, 2022

I was able to "Read Nirvana JSON output by lines" following the provided python instruction. However, when I tried to "Retrieve variants under a gnomAD allele frequency threshold", I got the following Error Message
"Traceback (most recent call last):
File freq_df_01.py", line 8, in
for position in positions:
NameError: name 'positions' is not defined"
What should I do to make it work? If it worked, how can I export an output json file containing only the data that are under the defined gnomAD allele frequency threshold? thanks in advance!

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