rely on parameters for meta; closes #21

IndrajeetPatil · Sep 17, 2020 · 8c1b5a6 · 8c1b5a6 · lintr-bot · Sep 17, 2020
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Type: Package
 Package: statsExpressions
 Title: Expressions with Statistical Details
-Version: 0.5.0
+Version: 0.5.0.9000
 Authors@R: 
     person(given = "Indrajeet",
            family = "Patil",

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,5 @@
+# statsExpressions 0.5.0.9000
+
 # statsExpressions 0.5.0
 
   - Adapts to changes made in `tidyBF` package.

diff --git a/R/helpers_meta_analysis_expressions.R b/R/helpers_meta_analysis_expressions.R
@@ -203,25 +203,7 @@ expr_meta_robust <- function(data,
   #----------------------- tidy output and subtitle ---------------------------
 
   # create a dataframe with coefficients
-  df_tidy <-
-    meta_res %>% {
-      dplyr::inner_join(
-        x = as_tibble(as.data.frame(.$results), rownames = "term"),
-        y = as_tibble(as.data.frame(.$profile@summary@coef), rownames = "term"),
-        by = "term"
-      ) %>%
-        dplyr::rename_all(.tbl = ., .funs = tolower) %>%
-        dplyr::select(
-          .data = .,
-          term,
-          estimate,
-          conf.low = `95% ci.lb`,
-          conf.high = `95% ci.ub`,
-          p.value = pvalue,
-          statistic = `z value`
-        ) %>%
-        dplyr::filter(.data = ., term == "muhat")
-    }
+  df_tidy <- dplyr::filter(.data = broomExtra::tidy_parameters(meta_res), term == "Overall")
 
   # preparing the subtitle
   expr_template(

diff --git a/R/helpers_t_test_expressions.R b/R/helpers_t_test_expressions.R
@@ -389,8 +389,7 @@ expr_t_nonparametric <- function(data,
 #'   data = dplyr::filter(bugs_long, condition %in% c("LDLF", "LDHF")),
 #'   x = condition,
 #'   y = desire,
-#'   paired = TRUE,
-#'   nboot = 25
+#'   paired = TRUE
 #' )
 #' }
 #' @export

diff --git a/README.md b/README.md
diff --git a/codemeta.json b/codemeta.json
@@ -16,7 +16,7 @@
   ],
   "issueTracker": "\n    https://github.com/IndrajeetPatil/statsExpressions/issues",
   "license": "https://spdx.org/licenses/GPL-3.0",
-  "version": "0.5.0",
+  "version": "0.5.0.9000",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -333,6 +333,6 @@
     "name": "Comprehensive R Archive Network (CRAN)",
     "url": "https://cran.r-project.org"
   },
-  "fileSize": "3808.79KB",
+  "fileSize": "3808.376KB",
   "readme": "https://github.com/IndrajeetPatil/statsExpressions/blob/master/README.md"
 }
diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html
diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/SUPPORT.html b/docs/SUPPORT.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/stats_details.html b/docs/articles/stats_details.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -3,7 +3,7 @@ pkgdown: 1.5.1
 pkgdown_sha: ~
 articles:
   stats_details: stats_details.html
-last_built: 2020-09-11T23:22Z
+last_built: 2020-09-13T17:17Z
 urls:
   reference: https://indrajeetpatil.github.io/statsExpressions//reference
   article: https://indrajeetpatil.github.io/statsExpressions//articles

diff --git a/docs/reference/Titanic_full.html b/docs/reference/Titanic_full.html
diff --git a/docs/reference/VR_dilemma.html b/docs/reference/VR_dilemma.html
diff --git a/docs/reference/bugs_long.html b/docs/reference/bugs_long.html
diff --git a/docs/reference/expr_anova_bayes.html b/docs/reference/expr_anova_bayes.html
diff --git a/docs/reference/expr_anova_nonparametric.html b/docs/reference/expr_anova_nonparametric.html
diff --git a/docs/reference/expr_anova_parametric.html b/docs/reference/expr_anova_parametric.html
diff --git a/docs/reference/expr_anova_robust.html b/docs/reference/expr_anova_robust.html
diff --git a/docs/reference/expr_contingency_tab.html b/docs/reference/expr_contingency_tab.html
diff --git a/docs/reference/expr_corr_test.html b/docs/reference/expr_corr_test.html
diff --git a/docs/reference/expr_meta_bayes.html b/docs/reference/expr_meta_bayes.html
diff --git a/docs/reference/expr_meta_parametric.html b/docs/reference/expr_meta_parametric.html
diff --git a/docs/reference/expr_meta_robust.html b/docs/reference/expr_meta_robust.html
diff --git a/docs/reference/expr_t_bayes.html b/docs/reference/expr_t_bayes.html
diff --git a/docs/reference/expr_t_nonparametric.html b/docs/reference/expr_t_nonparametric.html
diff --git a/docs/reference/expr_t_onesample.html b/docs/reference/expr_t_onesample.html
diff --git a/docs/reference/expr_t_parametric.html b/docs/reference/expr_t_parametric.html