CodeCov is back 👯 #286
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name: Run the tests | |
on: [pull_request] | |
jobs: | |
build: | |
strategy: | |
matrix: | |
include: | |
- os: ubuntu-20.04 | |
label: linux-64 | |
prefix: /usr/share/miniconda3/envs/bionc | |
- os: macos-latest | |
label: osx-64 | |
prefix: /Users/runner/miniconda3/envs/bionc | |
- os: windows-latest | |
label: win-64 | |
prefix: C:\Miniconda3\envs\bionc | |
name: ${{ matrix.label }} | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@master | |
- name: Setup environment | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
miniforge-variant: Mambaforge | |
miniforge-version: latest | |
use-mamba: true | |
activate-environment: bionc | |
environment-file: environment.yml | |
- name: Print mamba info | |
run: | | |
mamba config --show | |
mamba info | |
mamba list | |
- name: Install extra dependencies | |
run: mamba install pytest-cov pytest codecov coverage -cconda-forge | |
- name: Run the actual tests on LINUX | |
run: | | |
sudo apt-get install xvfb | |
xvfb-run --server-args="-screen 0 1024x768x24" pytest -v --color=yes --cov-report term-missing --cov=bionc tests | |
if: matrix.label == 'linux-64' | |
- name: Run the actual tests | |
run: pytest -v --color=yes --cov-report=xml --cov=bionc tests | |
if: matrix.label == 'osx-64' | |
- name: Show current dir content with new .coverage file | |
run: pwd; ls -a | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v2 | |
with: | |
flags: unittests | |
fail_ci_if_error: true | |
verbose: true | |
token: ${{ secrets.CODECOV_TOKEN }} | |
file: coverage.xml | |
if: matrix.label == 'osx-64' | |
- name: Test installed version of bioviz on LINUX | |
run: | | |
python setup.py install | |
cd | |
xvfb-run --server-args="-screen 0 1024x768x24" python -c "import bionc" | |
if: matrix.label == 'linux-64' | |
- name: Test installed version of bionc on WINDOWS and MAC | |
run: | | |
python setup.py install | |
cd | |
python -c "import bionc" | |
if: matrix.label != 'linux-64' |