Update to 16.04 LTS, and PHP7; Address #181. (#323)

* Add FITS Web Service; Address #309.
* Update to 16.04 LTS, and PHP7; Address #181.

install/Vagrantfile

@@ -48,7 +48,7 @@ Vagrant.configure(VAGRANTFILE_API_VERSION) do |config|
   end
 
   # Every Vagrant virtual environment requires a box to build off of.
-  config.vm.box = "ubuntu/trusty64"
+  config.vm.box = "bento/ubuntu-16.04"
 
   # Setup the shared folder
   home_dir = "/home/vagrant"
@@ -72,7 +72,6 @@ Vagrant.configure(VAGRANTFILE_API_VERSION) do |config|
   config.vm.provision :shell, :path => "./scripts/fits.sh", :args => home_dir
   config.vm.provision :shell, :path => "./scripts/solr.sh", :args => home_dir
   config.vm.provision :shell, :path => "./scripts/composer.sh", :args => home_dir
-  config.vm.provision :shell, :path => "./scripts/twigcextensions.sh", :args => home_dir
   config.vm.provision :shell, :path => "./scripts/drupal.sh", :args => home_dir
   config.vm.provision :shell, :path => "./scripts/fcrepo.sh", :args => home_dir
   config.vm.provision :shell, :path => "./scripts/blazegraph.sh", :args => home_dir

install/scripts/bootstrap.sh

@@ -17,11 +17,6 @@ export DEBIAN_FRONTEND=noninteractive
 
 cp "$HOME_DIR"/islandora/install/configs/motd /etc/motd
 
-# Add repo for Oracle's JDK 8, rationale #L36-38
-add-apt-repository -y ppa:webupd8team/java
-# Add repo for PHP 5.6
-add-apt-repository -y ppa:ondrej/php
-
 # Update all the things.
 apt-get -y -qq update && apt-get -y -qq upgrade
 
@@ -35,18 +30,9 @@ apt-get -y -qq install build-essential
 apt-get -y -qq install git vim
 
 # Java
-## There is no Java8 OpenJDK right now in the Ubuntu repos
-## http://askubuntu.com/questions/464755/how-to-install-openjdk-8-on-14-04-lts
-## We'll use Oracle Java8 for now.
-# Java (Oracle)
-apt-get -qq install -y software-properties-common
-apt-get -qq install -y python-software-properties
-echo debconf shared/accepted-oracle-license-v1-1 select true | sudo debconf-set-selections
-echo debconf shared/accepted-oracle-license-v1-1 seen true | sudo debconf-set-selections
-apt-get -qq install -y oracle-java8-installer
-update-java-alternatives -s java-8-oracle
-apt-get -qq install -y oracle-java8-set-default
-export JAVA_HOME=/usr/lib/jvm/java-8-oracle
+apt-get -y install openjdk-8-jdk openjdk-8-jdk-headless openjdk-8-jre
+sed -i '$iJAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64' /etc/environment
+export JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64
 
 # Maven
 apt-get -y -qq install maven
@@ -66,7 +52,7 @@ MAN_FILES=$(wget -qO- "http://sourceforge.net/projects/zsh/files/zsh/5.0.2/zsh-5
 for MAN_FILE in $MAN_FILES; do gzip /usr/share/man/man1/"${MAN_FILE##*/}"; done
 
 # More helpful packages
-apt-get -y -qq install htop tree zsh fish
+apt-get -y -qq install htop tree zsh fish unzip
 
 # Set some params so it's non-interactive for the lamp-server install
 debconf-set-selections <<< 'mysql-server mysql-server/root_password password islandora'
@@ -75,4 +61,4 @@ debconf-set-selections <<< "postfix postfix/mailname string islandora-fedora4.or
 debconf-set-selections <<< "postfix postfix/main_mailer_type string 'Internet Site'"
 
 # Set JAVA_HOME -- Java8 set-default does not seem to do this.
-sed -i 's|#JAVA_HOME=/usr/lib/jvm/openjdk-6-jdk|JAVA_HOME=/usr/lib/jvm/java-8-oracle|g' /etc/default/tomcat7
+sed -i 's|#JAVA_HOME=/usr/lib/jvm/openjdk-6-jdk|JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64|g' /etc/default/tomcat7

install/scripts/composer.sh

@@ -1,7 +1,6 @@
 #!/bin/bash
 echo "Installing Composer"
 
-apt-get install -y php5.6-mbstring php5.6-dev
 curl -sS https://getcomposer.org/installer | php
 php composer.phar install --no-progress
 mv composer.phar /usr/local/bin/composer

install/scripts/drupal.sh

@@ -11,7 +11,7 @@ fi
 cd "$HOME_DIR"
 
 # Drush and drupal deps
-apt-get -y -qq install php5.6-gd php5.6-xml php5.6-mysql php5.6-curl php5.6-json php-stomp
+apt-get -y -qq install php7.0-gd php7.0-xml php7.0-mysql php7.0-curl php7.0-json php-stomp
 cd /tmp && wget http://files.drush.org/drush.phar
 chmod +x drush.phar
 mv drush.phar /usr/local/bin/drush

install/scripts/islandora-karaf-components.sh

@@ -8,6 +8,7 @@ if [ -f "$HOME_DIR/islandora/install/configs/variables" ]; then
 fi
 
 echo "Installing Islandora Sync Gateway"
+export JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64
 $KARAF_CLIENT -f $KARAF_CONFIGS/islandora_sync_gateway.script
 sleep 10
 echo "Installing Islandora Triplestore Indexer"

install/scripts/karaf.sh

@@ -37,10 +37,10 @@ echo "Symlinking Apache Karaf... "
 ln -s "/opt/apache-karaf-$KARAF_VERSION" $KARAF_DIR
 echo " done"
 
-
 if [ ! -L "/etc/init.d/karaf-service" ]; then
     echo "Installing Karaf as a service... "
     # Run a setup script to add some feature repos and prepare it for running as a service
+    export JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64
     $KARAF_DIR/bin/start
     sleep 60
     `${KARAF_CLIENT} -f ${KARAF_CONFIGS}/karaf_service.script`
@@ -71,6 +71,4 @@ fi
 echo "Starting Karaf as a service... "
 service karaf-service start
 sleep 60
-echo "done"
-
-
+echo " done"

install/scripts/lamp-server.sh

@@ -2,7 +2,7 @@
 
 echo "Installing LAMP server packages"
 
-PACKAGES="libwrap0 ssl-cert libterm-readkey-perl mysql-client-5.5 libdbi-perl libmysqlclient18 mysql-server-core-5.5 mysql-common apache2 mysql-server-5.5 mysql-client-core-5.5 tcpd libaio1 mysql-server libdbd-mysql-perl libhtml-template-perl php5.6 libapache2-mod-php5.6"
+PACKAGES="libwrap0 ssl-cert libterm-readkey-perl mysql-client libdbi-perl libmysqlclient20 mysql-client-core-5.7 mysql-common apache2 mysql-server mysql-server-core-5.7 tcpd libaio1 mysql-server libdbd-mysql-perl libhtml-template-perl php7.0 php7.0-dev libapache2-mod-php7.0 php7.0-mbstring"
 
 apt-get -qq install -y $PACKAGES