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Merge release/1.5.1 into develop #866

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merged 32 commits into from
Nov 9, 2023

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@climbfuji climbfuji commented Nov 8, 2023

Summary

Merge release/1.5.1 into develop. There were a few conflicts to resolve, but hopefully I got it all right.

Testing

  • CI
  • release/1.5.1 was installed successfully on all systems, but this PR has not been tested on those platforms

Applications affected

n/a

Systems affected

Potentially all.

Dependencies

Issue(s) addressed

Resolves #861

Checklist

  • This PR addresses one issue/problem/enhancement, or has a very good reason for not doing so.
  • These changes have been tested on the affected systems and applications (in the release branch).
  • All dependency PRs/issues have been resolved and this PR can be merged.

climbfuji and others added 30 commits September 28, 2023 15:59
* adding instructions so that temporary environment variable gets set up correctly

Co-authored-by: Dom Heinzeller <dom.heinzeller@icloud.com>
* Bumped bufr version to 12.0.1, change .gitconfig urls for testing
* Updated spack submodule commit hash
release/1.5.1: bump bufr version to 12.0.1 (cherry-pick JCSDA#797 from develop)
…ith the replacement qhull for tesselation and since it leads to compilation errors in ecmwf-atlas with Intel
…atlas_ci

* Workaround for spack-stack-1.5.0 on Hera: use new noavx512 install, add target 'haswell'
* Update default atlas version to 0.35.0
* Update build variants for ecmwf-atlas and ectrans
* Remove deprecated variant cgal from ecmwf-atlas, since it conflicts with the replacement qhull for tesselation and since it leads to compilation errors in ecmwf-atlas with Intel

* Revert .gitmodules and update submodule pointer for spack
…cho documentation Bugfix/container ectrans fftw derecho docs (JCSDA#821)

* Comment out intel-oneapi-mkl in configs/containers/docker-ubuntu-intel-impi.yaml and fix wrong variant ~fftw for jedi-base-env in configs/containers/README.md
* Fix incorrect variant name for mkl for package ectrans in configs/common/packages.yaml
* Fix outdated instructions for Derecho in doc/source/PreConfiguredSites.rst
* Update submodule pointer for spack
release/1.5.1: add nc-diag@1.1.2 (from develop)
* ESMF@8.5.0, MAPL@2.40.3 as defaults

* update fms versions in unified-dev

* Revert "update fms versions in unified-dev"

This reverts commit a276e2b.

* update fms ver in ufs wm metapackage

* update fms ver in unified-dev

* update gftl-shared default to 1.6.1

* pointer update

* try adding py-pandas version for ubuntu CI failure

* default py-pandas@1.5.3

* restore submodule pointer
)

* Switch Hercules gnu MPI library to mvapich2
* Update doc/source/PreConfiguredSites.rst for release 1.5.1 on Hercules
…cover, AWS ParallelCluster, S4 (JCSDA#853)

* Update site config for Derecho
* Update documentation for spack-stack-1.5.1 install on AWS ParallelCluster
* Turn of ssl variant for Python for Derecho, Gaea C5, Narwhal
* Add explicit variant external-xdr for hdf in configs/common/packages.yaml
* Update doc/source/PreConfiguredSites.rst for Discover
* Update documentation for spack-stack-1.5.1 on S4
* Update site configs for NOAA Parallel Works
* Update casper site config and build documentation
* Update container specs in configs/containers/README.md
* Update Hercules site config (gnu@12, mvapich2@2.3.7)
* Update  doc/source/PreConfiguredSites.rst for casper, hera, gaea-c4, jet
* Add fms@2023.03 in spack submodule, add to unified-dev and skylab-dev templates
* Update configs/containers after tagging spack submodule as spack-stack-1.5.1
* Update documentation for AWS AMI release 1.5.1
* Update macOS section in doc/source/NewSiteConfigs.rst to match Linux section
@climbfuji climbfuji self-assigned this Nov 9, 2023
@climbfuji climbfuji added the INFRA JEDI Infrastructure label Nov 9, 2023
@climbfuji climbfuji merged commit d75a997 into JCSDA:develop Nov 9, 2023
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@climbfuji climbfuji deleted the feature/merge_rel151_into_dev branch November 9, 2023 17:16
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Merge release/1.5.1 back into develop (after #860), with reminders
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