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Running on PIC

Ben Bond-Lamberty edited this page Apr 29, 2019 · 1 revision

This from Stephanie Waldhoff, who had some trouble.

Need to first load modules on PIC
module load git
module load svn/1.8.13
module load R/3.3.3
module load java/1.8.0_31
module load gcc/6.1.0


Building gcamdata on PIC, for GCAM 5.1 and above:
# From gcamdata directory
# Run R
> R
# At one point, devtools wasn’t loading properly, reinstalling glue fixed this.
# > install.packages(“glue”)
> install.packages("devtools")
   Warning in install.packages("devtools") :
     'lib = "/projects/ops/apps/rh6/R/3.3.3/lib64/R/library"' is not writable
   Would you like to use a personal library instead?  (y/n) y
   Would you like to create a personal library
   ~/R/x86_64-pc-linux-gnu-library/3.3
   to install packages into?  (y/n) y
   --- Please select a CRAN mirror for use in this session ---
   HTTPS CRAN mirror

   Selection: 63 (USA (OR))
> devtools::install_deps()
# Install All
> 1
> devtools::load_all()
> driver(write_outputs = FALSE, write_xml = TRUE)
# Assuming no errors…
> quit()