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fixed build environment to be simpler and more intuitive to make and …
…install
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Rob Egan
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Dec 11, 2012
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,60 +1,60 @@ | ||
| # Default flags to build optimized version | ||
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| Kmernator=/path/to/sourcecode/of/Kmernator | ||
| # assuming kmernator source is in .. | ||
| # i.e. | ||
| # tar -xvf Kmernator-1.0.tar | ||
| # cd Kmernator-1.0 | ||
| # mkdir build | ||
| # cd build | ||
| # | ||
| Kmernator=.. | ||
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| # for normal build | ||
| cmake $Kmernator -DCMAKE_CXX_FLAGS="-O3 -g -Wall -DNDEBUG" -DCMAKE_C_FLAGS="-O3 -g -Wall -DNDEBUG" | ||
| cmake $Kmernator | ||
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| # for build without MPI (if mpic++ exists and you do not want it for some reason) | ||
| cmake $Kmernator -DCMAKE_CXX_FLAGS="-O3 -g -Wall" -DCMAKE_C_FLAGS="-O3 -g -Wall" -DDISABLE_MPI | ||
| cmake $Kmernator -DDISABLE_MPI | ||
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| # for debug debug | ||
| cmake $Kmernator -DCMAKE_BUILD_TYPE=Debug | ||
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| # for debug build without OpenMP | ||
| cmake $Kmernator -DDISABLE_OPENMP=1 -DCMAKE_BUILD_TYPE=Debug | ||
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| # for build with non-standard g++, say if gcc-4.6.2 and both g++-4.6.2 exist in the PATH | ||
| ver=4.6.2 | ||
| libdir=$(dirname $(g++-${ver} --print-file-name=libstdc++.so)) | ||
| cmake $Kmernator -DCMAKE_CXX_COMPILER=`which g++-${ver}` -DCMAKE_C_COMPILER=`which gcc-${ver}` -DCMAKE_CXX_FLAGS="-O3 -g -Wall -Wl,-rpath,${libdir}" -DCMAKE_C_FLAGS="-O3 -g -Wall -Wl,-rpath,${libdir}" | ||
| export CFLAGS="-Wl,-rpath,${libdir}" | ||
| export CXXFLAGS="$CFLAGS" | ||
| cmake $Kmernator -DCMAKE_CXX_COMPILER=`which g++-${ver}` -DCMAKE_C_COMPILER=`which gcc-${ver}` | ||
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| # for NERSC hopper to use the cc and CC GNU compiler wrappers, tricking CMake and Boost to recognize the native MPI compiler: | ||
| # for NERSC hopper, using the suggested GNU compiler wrappers (cc and CC) | ||
| # and tricking CMake and Boost to recognize the native MPI compiler: | ||
| module load cmake | ||
| module swap PrgEnv-pgi PrgEnv-gnu | ||
| module remove xt-shmem | ||
| module remove iobuf | ||
| mpilib=$(basename $MPICH_DIR/lib/libmpich_gnu*.a); mpilib=${mpilib%.a} ; mpilib2=${mpilib#lib} | ||
| cmake $Kmernator -DCMAKE_C_COMPILER=`which cc` -DCMAKE_CXX_COMPILER=`which CC` -DCMAKE_CXX_FLAGS="-O3 -Wall -funroll-loops -ffast-math -DNDEBUG" -DCMAKE_C_FLAGS="-O3 -Wall -funroll-loops -ffast-math -DNDEBUG" -DMPI_COMPILER=`which CC` -DMPI_LIBRARY="$mpilib2" -DMPI_INCLUDE_PATH="${MPICH_DIR}/include" -DBOOST_MPI_USER_CONFIG="using mpi : : <find-static-library>$mpilib ;" | ||
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| ### OLD | ||
| #cmake $Kmernator -DCMAKE_C_COMPILER=`which cc` -DCMAKE_CXX_COMPILER=`which CC` -DCMAKE_CXX_FLAGS="-O3 -Wall -funroll-loops -ffast-math" -DCMAKE_C_FLAGS="-O3 -Wall -funroll-loops -ffast-math" -DMPI_INCLUDE_PATH="-I$MPICH_DIR/include" -DMPI_LIBRARY="$MPICH_DIR/lib/libmpich_gnu.a" -DMPI_LINK_FLAGS=" " -DMPI_LIBRARIES=" " -DBOOST_MPI_USER_CONFIG="using mpi : : <find-static-library>mpich_gnu ;" | ||
| #cmake $Kmernator -DCMAKE_C_COMPILER=`which cc` -DCMAKE_CXX_COMPILER=`which CC` -DCMAKE_CXX_FLAGS="-O3 -Wall -g" -DCMAKE_C_FLAGS="-O3 -Wall -g" -DMPI_INCLUDE_PATH="-I$MPICH_DIR/include" -DMPI_LIBRARY="$MPICH_DIR/lib/libmpich_gnu.a" -DMPI_LINK_FLAGS=" " -DBOOST_MPI_USER_CONFIG="using mpi : : <find-static-library>mpich_gnu ;" | ||
| #cmake $Kmernator -DCMAKE_C_COMPILER=`which cc` -DCMAKE_CXX_COMPILER=`which CC` -DCMAKE_CXX_FLAGS="-O3 -Wall -g" -DCMAKE_C_FLAGS="-O3 -Wall -g" -DMPI_INCLUDE_PATH="-I$MPICH_DIR/include" -DMPI_LIBRARY="$MPICH_DIR/lib/libmpich_gnu.a" -DMPI_LINK_FLAGS=" " -DBOOST_MPI_USER_CONFIG="using mpi : : <find-static-library>mpich_gnu <find-static-library>mpichcxx_gnu ; | ||
| #using gcc : : : <compileflags>-I$MPICH_DIR/include <linkflags>-L$MPICH_DIR/lib ; | ||
| #" | ||
| #cmake $Kmernator -DCMAKE_C_COMPILER=`which cc` -DCMAKE_CXX_COMPILER=`which CC` -DMPI_INCLUDE_PATH="-I." -DMPI_LIBRARY="libc.a" -DMPI_LINK_FLAGS=" " -DCMAKE_CXX_FLAGS="-dynamic -O3 -Wall -g" -DCMAKE_C_FLAGS="-dynamic -O3 -Wall -g" | ||
| # | ||
| # Very OLD Hopper build: | ||
| # for NERSC hopper.nersc.gov: gcc compilers and MPICH2 xt-mpt, threaded MPI | ||
| #module load cmake | ||
| #module swap PrgEnv-pgi PrgEnv-gnu | ||
| #export OMP_NUM_THREADS=4 | ||
| #export MPICH_MAX_THREAD_SAFETY=multiple | ||
| #module swap xt-libsci/10.4.3 xt-libsci/10.4.0 | ||
| #CC=cc CXX=CC \ | ||
| #cmake $Kmernator \ | ||
| # -DMPI_INCLUDE_PATH=${MPICH_DIR}/include \ | ||
| # -DMPI_LIBRARY="libc.a" -DMPI_LINK_FLAGS="-lmpich_threadm" \ | ||
| # -DCMAKE_CXX_FLAGS="-dynamic -O3 -Wall -g" | ||
| export CFLAGS="-funroll-loops" | ||
| export CXXFLAGS="$CFLAGS" | ||
| cmake $Kmernator -DCMAKE_C_COMPILER=`which cc` -DCMAKE_CXX_COMPILER=`which CC` \ | ||
| -DCMAKE_CXX_FLAGS="-O3 -Wall -funroll-loops -ffast-math -DNDEBUG" -DCMAKE_C_FLAGS="-O3 -Wall -funroll-loops -ffast-math -DNDEBUG" \ | ||
| -DMPI_COMPILER=`which CC` -DMPI_LIBRARY="$mpilib2" \ | ||
| -DMPI_INCLUDE_PATH="${MPICH_DIR}/include" \ | ||
| -DBOOST_MPI_USER_CONFIG="using mpi : : <find-static-library>$mpilib ;" | ||
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| # for NERSC carver | ||
| module unload pgi | ||
| module unload openmpi | ||
| module load gcc | ||
| module load openmpi-gnu | ||
| cmake $Kmernator -DCMAKE_C_COMPILER=`which gcc` -DCMAKE_CXX_COMPILER=`which g++` -DCMAKE_CXX_FLAGS="-O3 -Wall -ffast-math" -DCMAKE_C_FLAGS="-O3 -Wall -ffast-math" | ||
| cmake $Kmernator -DCMAKE_C_COMPILER=`which gcc` -DCMAKE_CXX_COMPILER=`which g++` | ||
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| # for debug | ||
| cmake $Kmernator -DCMAKE_CXX_FLAGS="-O0 -g -Wall -DDEBUG" -DCMAKE_C_FLAGS="-O0 -g -Wall -DDEBUG" | ||
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| # for profile | ||
| cmake $Kmernator -DCMAKE_CXX_FLAGS="-O3 -g -pg -Wall" | ||
| export CFLAGS="-g -pg" | ||
| export CXXFLAGS="$CFLAGS" | ||
| cmake $Kmernator | ||
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| # no openmp | ||
| cmake $Kmernator -DCMAKE_CXX_FLAGS="-O3 -g -Wall " -DDISABLE_OPENMP=1 | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,6 @@ | ||
| SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -O0 -Wall -DDEBUG") | ||
| SET(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -ffast-math") | ||
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| SET(CMAKE_C_FLAGS_DEBUG "${CMAKE_C_FLAGS_DEBUG} -O0 -Wall -DDEBUG") | ||
| SET(CMAKE_C_FLAGS_RELEASE "${CMAKE_C_FLAGS_RELEASE} -ffast-math") | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,4 @@ | ||
| #define Kmernator_VERSION_MAJOR "@Kmernator_VERSION_MAJOR@" | ||
| #define Kmerntaor_VERSION_MINOR "@Kmernator_VERSION_MINOR@" | ||
| #define Kmernator_VERSION_TAG "@Kmernator_VERSION_TAG@" | ||
| #define VERSION "@Kmernator_VERSION_MAJOR@.@Kmernator_VERSION_MINOR@-@Kmernator_VERSION_TAG@" |