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Failed to compile jabref from source. #6053

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hongyi-zhao opened this issue Mar 3, 2020 · 6 comments
Closed

Failed to compile jabref from source. #6053

hongyi-zhao opened this issue Mar 3, 2020 · 6 comments

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@hongyi-zhao
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hongyi-zhao commented Mar 3, 2020 •
edited
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Hi,

I try to compile the git master version of jabref based on the instructions here, but failed at the following step:

$ ./gradlew assemble -DsocksProxyHost=127.0.0.1 -DsocksProxyPort=18887
Starting a Gradle Daemon, 1 incompatible and 1 stopped Daemons could not be reused, use --status for details

> Configure project :
Found module name 'org.jabref'

> Task :compileJava FAILED

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':compileJava'.
> Could not target platform: 'Java SE 13' using tool chain: 'JDK 12 (12)'.

* Try:
Run with --info or --debug option to get more log output. Run with --scan to get full insights.

* Exception is:
org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':compileJava'.
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.lambda$executeIfValid$1(ExecuteActionsTaskExecuter.java:205)
        at org.gradle.internal.Try$Failure.ifSuccessfulOrElse(Try.java:263)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeIfValid(ExecuteActionsTaskExecuter.java:203)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:184)
        at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:114)
        at org.gradle.api.internal.tasks.execution.FinalizePropertiesTaskExecuter.execute(FinalizePropertiesTaskExecuter.java:46)
        at org.gradle.api.internal.tasks.execution.ResolveTaskExecutionModeExecuter.execute(ResolveTaskExecutionModeExecuter.java:62)
        at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:57)
        at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:56)
        at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.executeTask(EventFiringTaskExecuter.java:77)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:55)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter$1.call(EventFiringTaskExecuter.java:52)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:416)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$CallableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:406)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.call(DefaultBuildOperationExecutor.java:102)
        at org.gradle.internal.operations.DelegatingBuildOperationExecutor.call(DelegatingBuildOperationExecutor.java:36)
        at org.gradle.api.internal.tasks.execution.EventFiringTaskExecuter.execute(EventFiringTaskExecuter.java:52)
        at org.gradle.execution.plan.LocalTaskNodeExecutor.execute(LocalTaskNodeExecutor.java:41)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:372)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$InvokeNodeExecutorsAction.execute(DefaultTaskExecutionGraph.java:359)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:352)
        at org.gradle.execution.taskgraph.DefaultTaskExecutionGraph$BuildOperationAwareExecutionAction.execute(DefaultTaskExecutionGraph.java:338)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.lambda$run$0(DefaultPlanExecutor.java:127)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.execute(DefaultPlanExecutor.java:191)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.executeNextNode(DefaultPlanExecutor.java:182)
        at org.gradle.execution.plan.DefaultPlanExecutor$ExecutorWorker.run(DefaultPlanExecutor.java:124)
        at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64)
        at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:48)
        at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:56)
Caused by: java.lang.IllegalArgumentException: Could not target platform: 'Java SE 13' using tool chain: 'JDK 12 (12)'.
        at org.gradle.api.internal.tasks.AbstractJavaToolChain$UnavailableToolProvider.newCompiler(AbstractJavaToolChain.java:108)
        at org.gradle.api.tasks.compile.JavaCompile.createCompiler(JavaCompile.java:201)
        at org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:170)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
        at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:104)
        at org.gradle.api.internal.project.taskfactory.IncrementalInputsTaskAction.doExecute(IncrementalInputsTaskAction.java:32)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:42)
        at org.gradle.api.internal.project.taskfactory.AbstractIncrementalTaskAction.execute(AbstractIncrementalTaskAction.java:25)
        at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:28)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$3.run(ExecuteActionsTaskExecuter.java:568)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:402)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:394)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor$1.execute(DefaultBuildOperationExecutor.java:165)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:250)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:158)
        at org.gradle.internal.operations.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:92)
        at org.gradle.internal.operations.DelegatingBuildOperationExecutor.run(DelegatingBuildOperationExecutor.java:31)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:553)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:536)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.access$300(ExecuteActionsTaskExecuter.java:109)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$TaskExecution.executeWithPreviousOutputFiles(ExecuteActionsTaskExecuter.java:276)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$TaskExecution.execute(ExecuteActionsTaskExecuter.java:265)
        at org.gradle.internal.execution.steps.ExecuteStep.lambda$execute$0(ExecuteStep.java:32)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:32)
        at org.gradle.internal.execution.steps.ExecuteStep.execute(ExecuteStep.java:26)
        at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:67)
        at org.gradle.internal.execution.steps.CleanupOutputsStep.execute(CleanupOutputsStep.java:36)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:49)
        at org.gradle.internal.execution.steps.ResolveInputChangesStep.execute(ResolveInputChangesStep.java:34)
        at org.gradle.internal.execution.steps.CancelExecutionStep.execute(CancelExecutionStep.java:43)
        at org.gradle.internal.execution.steps.TimeoutStep.executeWithoutTimeout(TimeoutStep.java:73)
        at org.gradle.internal.execution.steps.TimeoutStep.execute(TimeoutStep.java:54)
        at org.gradle.internal.execution.steps.CatchExceptionStep.execute(CatchExceptionStep.java:34)
        at org.gradle.internal.execution.steps.CreateOutputsStep.execute(CreateOutputsStep.java:44)
        at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:54)
        at org.gradle.internal.execution.steps.SnapshotOutputsStep.execute(SnapshotOutputsStep.java:38)
        at org.gradle.internal.execution.steps.BroadcastChangingOutputsStep.execute(BroadcastChangingOutputsStep.java:49)
        at org.gradle.internal.execution.steps.CacheStep.executeWithoutCache(CacheStep.java:153)
        at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:67)
        at org.gradle.internal.execution.steps.CacheStep.execute(CacheStep.java:41)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:44)
        at org.gradle.internal.execution.steps.StoreExecutionStateStep.execute(StoreExecutionStateStep.java:33)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:38)
        at org.gradle.internal.execution.steps.RecordOutputsStep.execute(RecordOutputsStep.java:24)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.executeBecause(SkipUpToDateStep.java:92)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.lambda$execute$0(SkipUpToDateStep.java:85)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:55)
        at org.gradle.internal.execution.steps.SkipUpToDateStep.execute(SkipUpToDateStep.java:39)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:76)
        at org.gradle.internal.execution.steps.ResolveChangesStep.execute(ResolveChangesStep.java:37)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:36)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsFinishedStep.execute(MarkSnapshottingInputsFinishedStep.java:26)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:94)
        at org.gradle.internal.execution.steps.ResolveCachingStateStep.execute(ResolveCachingStateStep.java:49)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:79)
        at org.gradle.internal.execution.steps.CaptureStateBeforeExecutionStep.execute(CaptureStateBeforeExecutionStep.java:53)
        at org.gradle.internal.execution.steps.ValidateStep.execute(ValidateStep.java:74)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.lambda$execute$2(SkipEmptyWorkStep.java:78)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:78)
        at org.gradle.internal.execution.steps.SkipEmptyWorkStep.execute(SkipEmptyWorkStep.java:34)
        at org.gradle.internal.execution.steps.legacy.MarkSnapshottingInputsStartedStep.execute(MarkSnapshottingInputsStartedStep.java:39)
        at org.gradle.internal.execution.steps.LoadExecutionStateStep.execute(LoadExecutionStateStep.java:40)
        at org.gradle.internal.execution.steps.LoadExecutionStateStep.execute(LoadExecutionStateStep.java:28)
        at org.gradle.internal.execution.impl.DefaultWorkExecutor.execute(DefaultWorkExecutor.java:33)
        at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeIfValid(ExecuteActionsTaskExecuter.java:192)
        ... 30 more


* Get more help at https://help.gradle.org

Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/6.2.1/userguide/command_line_interface.html#sec:command_line_warnings

BUILD FAILED in 15s
7 actionable tasks: 7 executed
@Siedlerchr
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Hi the error message is pretty clear. You need JDK 13.

@hongyi-zhao
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hongyi-zhao commented Mar 3, 2020 •
edited
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Thanks, it does the trick. I missed that information.

@hongyi-zhao
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But the official instructions is misleading, see the following from here:

https://docs.jabref.org/general/installation#building-from-source

To build JabRef from source, you first need to have a working Java Development Kit 11 (JDK 11)

@Siedlerchr
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Thanks for the hint! I will update and link to the correct https://devdocs.jabref.org/guidelines-for-setting-up-a-local-workspace

@hongyi-zhao
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Thanks again. The above link use the following method to run jabref directly:

$ ./gradlew run

Instead of run the following to link it first:
$ ./gradlew jlink

Which is more good for this case?

@Siedlerchr
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for directly starting jabref ./gradlew run is sufficient.
./gradlew jlink is only necessary if you want to test issues which occur only in the installer or native packaged version, e.g. resources not being found or modularity issues and not when running from gradlew run.

koppor pushed a commit that referenced this issue Jun 1, 2022
Squashed 'buildres/csl/csl-styles/' changes from 649aac4..e740261
e89145e 
e740261 Merge pull request #6075 from POBrien333/patch-1048
5251887 Update society-of-biblical-literature-fullnote-bibliography.csl
b4938f4 Update society-of-biblical-literature-1st-edition-fullnote-bibliography.csl
b7afaa1 Update Food and Agriculture Organization of the United Nations to comply with 2022 revision (#6072)
5218a45 Update avian-research.csl (#6076)
627ce4a Merge pull request #5983 from tutam/patch-1
08bd306 Re-indent CSL styles
d97aec7 Update suomen-antropologi-journal-of-the-finnish-anthropological-society.csl
00439b1 Re-indent CSL styles
914a4dc Update suomen-antropologi-journal-of-the-finnish-anthropological-society.csl
ef4ecff Re-indent CSL styles
224b1d3 Update society-of-biblical-literature-1st-edition-fullnote-bibliography.csl
3297912 Update society-of-biblical-literature-1st-edition-fullnote-bibliography.csl
156a850 add title-short to all SBL variants
3f6c407 Merge pull request #6071 from denismaier/fixbernsozanthro
a7b3228 Re-indent CSL styles
d624bda removes abstract from issued macro
f3221f4 Update glossa.csl (#6070)
63c0c6d Rework frontiers-in-ecology-and-the-environment.csl (#6067)
7502061 Bump nokogiri from 1.13.5 to 1.13.6 (#6068)
374238f Bump nokogiri from 1.13.4 to 1.13.5 (#6065)
7b09f4f Create journal-of-occupational-and-environmental-medicine.csl (#6053)
9e7a74b Update revista-ladinia.csl (#6058)
13461e5 Update suomen-antropologi-journal-of-the-finnish-anthropological-society.csl
2e86264 Re-indent CSL styles
98ff3de Update suomen-antropologi-journal-of-the-finnish-anthropological-society.csl
bcab5dc Fix timestamp
76aeb4c Create suomen-antropologi-journal-of-the-finnish-anthropological-society.csl

git-subtree-dir: buildres/csl/csl-styles
git-subtree-split: e740261
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@Siedlerchr @hongyi-zhao