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Invalid Bibtex records / DOI not extracted from imported PDF files #6577

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avm19 opened this issue Jun 3, 2020 · 2 comments · Fixed by #6578
Closed
1 task done

Invalid Bibtex records / DOI not extracted from imported PDF files #6577

avm19 opened this issue Jun 3, 2020 · 2 comments · Fixed by #6578
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@avm19
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avm19 commented Jun 3, 2020

Observed behaviour:
Some PDF files are imported as invalid Bibtex records of type @Misc with empty Bibtexkey and with only one field file. I suppose, this is caused the failure to extract DOI from the first page of a PDF file. (JabRef docs say "In case a DOI is found on the first page, the DOI is used to generate the BibTeX information")

Expected behaviour:
JabRef extracts DOI from the PDF and retrieves the necessary information from the internet.

Steps to reproduce the observed behavior:

  1. Download the pdf file
  2. In JabRef: Lookup -> Search for unlinked local files; scan the directory with the file, select the file, proceed to Import.
  3. Observe a new record in the database, which looks as follows:
    image

JabRef version
JabRef 5.1--2020-06-02--46fd96b
Windows 10 10.0 amd64
Java 14.0.1

@Siedlerchr
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Thanks for reporting that issue. JabRef first checks for XMP metadata to be present and then tries the "magic" PDF extraction. However, the XMP parser did not correctly indicate that the entry is empty (contains no fields) and therefore the PDF extractor was not called.

This should now be fixed in the latest master (currently building, ready in ~30min)

@Siedlerchr
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In addition, the docs are a bit outdated. Feel free to edit them! Just click on "Edit at github"

koppor pushed a commit that referenced this issue Jul 1, 2023
80b3861bce Update al-jamiah-journal-of-islamic-studies.csl (#6581)
b6fb00e415 Create arachnologische-mitteilungen.csl (#6375)
2dbc8edf8e Update universitat-basel-iberoromanistik.csl (#6580)
fd230a7073 Create veterinary-clinical-pathology.csl (#6372)
ac0afa3cae Create dedicated Basque APA file (#6370)
fee0677a88 Update chicago-author-date.csl (#6289)
ca1bf2db6e Create van-yuzuncu-yil-universitesi-fen-bilimleri-enstitusu.csl (#6230)
f4116db325 Create Turcica.csl (#6240)
0e4311a802 Create jurnal-teknik-mesin-indonesia.csl (#6211)
e73bf46674 Update vancouver.csl (#6156)
b73c3ef193 Create independent TF AIP Style
befa82e7ef Create harvard-xi-an-jiaotong-liverpool-univeisity.csl (#6181)
048c9bddbc Add csl for SDMI (#6129)
1c2aedd088 Update and rename dependent/energy-research-and-social-science.csl to energy-research-and-social-science.csl (#6567)
b77084255f Update the-quarterly-journal-of-economics.csl (#6572)
cf66f60f25 Update publicatiewijzer-voor-de-archeologie.csl (#6577)
9e9e08c219 Update isara-iso-690.csl (#6578)
4b4e8f442d Create silva-fennica.csl (#6568)
dd8760bb2b Update american-journal-of-botany.csl (#6569)
8b0e505363 Update haute-ecole-de-gestion-de-geneve-iso-690.csl (#6560)
016050c4b7 Update geographie-et-cultures.csl (#6563)
e8b62f1c80 Update and rename dependent/retina.csl to retina.csl (#6565)

git-subtree-dir: buildres/csl/csl-styles
git-subtree-split: 80b3861bce121a64d43ef167581f8d100a4f70aa
calixtus pushed a commit that referenced this issue Jul 1, 2023
…ce (#10048)

80b3861bce Update al-jamiah-journal-of-islamic-studies.csl (#6581)
b6fb00e415 Create arachnologische-mitteilungen.csl (#6375)
2dbc8edf8e Update universitat-basel-iberoromanistik.csl (#6580)
fd230a7073 Create veterinary-clinical-pathology.csl (#6372)
ac0afa3cae Create dedicated Basque APA file (#6370)
fee0677a88 Update chicago-author-date.csl (#6289)
ca1bf2db6e Create van-yuzuncu-yil-universitesi-fen-bilimleri-enstitusu.csl (#6230)
f4116db325 Create Turcica.csl (#6240)
0e4311a802 Create jurnal-teknik-mesin-indonesia.csl (#6211)
e73bf46674 Update vancouver.csl (#6156)
b73c3ef193 Create independent TF AIP Style
befa82e7ef Create harvard-xi-an-jiaotong-liverpool-univeisity.csl (#6181)
048c9bddbc Add csl for SDMI (#6129)
1c2aedd088 Update and rename dependent/energy-research-and-social-science.csl to energy-research-and-social-science.csl (#6567)
b77084255f Update the-quarterly-journal-of-economics.csl (#6572)
cf66f60f25 Update publicatiewijzer-voor-de-archeologie.csl (#6577)
9e9e08c219 Update isara-iso-690.csl (#6578)
4b4e8f442d Create silva-fennica.csl (#6568)
dd8760bb2b Update american-journal-of-botany.csl (#6569)
8b0e505363 Update haute-ecole-de-gestion-de-geneve-iso-690.csl (#6560)
016050c4b7 Update geographie-et-cultures.csl (#6563)
e8b62f1c80 Update and rename dependent/retina.csl to retina.csl (#6565)

git-subtree-dir: buildres/csl/csl-styles
git-subtree-split: 80b3861bce121a64d43ef167581f8d100a4f70aa

Co-authored-by: github actions <jabrefmail+webfeedback@gmail.com>
koppor pushed a commit that referenced this issue Jul 15, 2023
a97dbb32c5 Update studii-teologice.csl (#6591)
e19e08780e Update acm-sig-proceedings-long-author-list.csl (#6594)
c8abbcdd88 Update acm-sig-proceedings.csl (#6595)
725ace4a40 Create uppsala-university-library-harvard.csl (#6574)
a973041e0e update bluebook-law-review.csl (#6583)
0891cfc49a Update masarykova-univerzita-pravnicka-fakulta.csl (#6589)
80b3861bce Update al-jamiah-journal-of-islamic-studies.csl (#6581)
b6fb00e415 Create arachnologische-mitteilungen.csl (#6375)
2dbc8edf8e Update universitat-basel-iberoromanistik.csl (#6580)
fd230a7073 Create veterinary-clinical-pathology.csl (#6372)
ac0afa3cae Create dedicated Basque APA file (#6370)
fee0677a88 Update chicago-author-date.csl (#6289)
ca1bf2db6e Create van-yuzuncu-yil-universitesi-fen-bilimleri-enstitusu.csl (#6230)
f4116db325 Create Turcica.csl (#6240)
0e4311a802 Create jurnal-teknik-mesin-indonesia.csl (#6211)
e73bf46674 Update vancouver.csl (#6156)
b73c3ef193 Create independent TF AIP Style
befa82e7ef Create harvard-xi-an-jiaotong-liverpool-univeisity.csl (#6181)
048c9bddbc Add csl for SDMI (#6129)
1c2aedd088 Update and rename dependent/energy-research-and-social-science.csl to energy-research-and-social-science.csl (#6567)
b77084255f Update the-quarterly-journal-of-economics.csl (#6572)
cf66f60f25 Update publicatiewijzer-voor-de-archeologie.csl (#6577)
9e9e08c219 Update isara-iso-690.csl (#6578)
4b4e8f442d Create silva-fennica.csl (#6568)
dd8760bb2b Update american-journal-of-botany.csl (#6569)
8b0e505363 Update haute-ecole-de-gestion-de-geneve-iso-690.csl (#6560)
016050c4b7 Update geographie-et-cultures.csl (#6563)
e8b62f1c80 Update and rename dependent/retina.csl to retina.csl (#6565)

git-subtree-dir: buildres/csl/csl-styles
git-subtree-split: a97dbb32c57c8c00e47422dae4ba4f480e753da5
koppor pushed a commit that referenced this issue Aug 1, 2023
0749a19b83 Update journal-of-experimental-botany.csl (#6604)
b1768724fe Update modern-language-association.csl (#6606)
dd364c1815 Create modern-language-association-for-JEI.csl (#6593)
6cb436997b Partial update of APA styles for 1.0.2, including software, legal, most localizations (#6270)
d7c4ebec85 fix film/video authors for american-sociological-association.csl (#6602)
a97dbb32c5 Update studii-teologice.csl (#6591)
e19e08780e Update acm-sig-proceedings-long-author-list.csl (#6594)
c8abbcdd88 Update acm-sig-proceedings.csl (#6595)
725ace4a40 Create uppsala-university-library-harvard.csl (#6574)
a973041e0e update bluebook-law-review.csl (#6583)
0891cfc49a Update masarykova-univerzita-pravnicka-fakulta.csl (#6589)
80b3861bce Update al-jamiah-journal-of-islamic-studies.csl (#6581)
b6fb00e415 Create arachnologische-mitteilungen.csl (#6375)
2dbc8edf8e Update universitat-basel-iberoromanistik.csl (#6580)
fd230a7073 Create veterinary-clinical-pathology.csl (#6372)
ac0afa3cae Create dedicated Basque APA file (#6370)
fee0677a88 Update chicago-author-date.csl (#6289)
ca1bf2db6e Create van-yuzuncu-yil-universitesi-fen-bilimleri-enstitusu.csl (#6230)
f4116db325 Create Turcica.csl (#6240)
0e4311a802 Create jurnal-teknik-mesin-indonesia.csl (#6211)
e73bf46674 Update vancouver.csl (#6156)
b73c3ef193 Create independent TF AIP Style
befa82e7ef Create harvard-xi-an-jiaotong-liverpool-univeisity.csl (#6181)
048c9bddbc Add csl for SDMI (#6129)
1c2aedd088 Update and rename dependent/energy-research-and-social-science.csl to energy-research-and-social-science.csl (#6567)
b77084255f Update the-quarterly-journal-of-economics.csl (#6572)
cf66f60f25 Update publicatiewijzer-voor-de-archeologie.csl (#6577)
9e9e08c219 Update isara-iso-690.csl (#6578)
4b4e8f442d Create silva-fennica.csl (#6568)
dd8760bb2b Update american-journal-of-botany.csl (#6569)
8b0e505363 Update haute-ecole-de-gestion-de-geneve-iso-690.csl (#6560)
016050c4b7 Update geographie-et-cultures.csl (#6563)
e8b62f1c80 Update and rename dependent/retina.csl to retina.csl (#6565)

git-subtree-dir: buildres/csl/csl-styles
git-subtree-split: 0749a19b8306f2e8dcb9bf1a2e3a6992666030ac
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