PHyRAD is a suite of tools to perform phylogenetic analyses (phyloHyRAD) or population genetic analyses (popHyRAD) from HyRAD data.
Reference:
Gauthier J, Pajlokiv M, Neuenschwander S, Kaila L, Schmid S, Orlando L, Alvarez N (2020). Museomics identifies genetic erosion in two butterfly species across the 20th century in Finland. Molecular Ecology Resources.
(https://doi.org/10.1111/1755-0998.13167)