How to process the float values

[CharlesAnalyst]

At sometimes, the "ref" column: “the SNP-level allele-specific read counts of the reference allele” contains the float type values, for example, DNA methylation. So, is it practical to run the ASEP software after int(float value)? or do you have any suggestions?

thank you.

[Jiaxin-Fan]

Hi Charles, ASEP is an RNA-seq data-based method and only takes integer value as input for ‘ref’ and ‘total’. I am not quite familiar with DNA methylation. But as long as you think the changings in ratio of ref/total before and after the rounding is similar, then I would say rounding to integer would be a good way to handle the data. Best, Jiaxin From: Charles <notifications@github.com> Reply-To: Jiaxin-Fan/ASEP <reply@reply.github.com> Date: Wednesday, August 5, 2020 at 3:21 AM To: Jiaxin-Fan/ASEP <ASEP@noreply.github.com> Cc: Subscribed <subscribed@noreply.github.com> Subject: [External] [Jiaxin-Fan/ASEP] How to process the float values (#1) At sometimes, the "ref" column: “the SNP-level allele-specific read counts of the reference allele” contains the float type values, for example, DNA methylation. So, is it practical to run the ASEP software after int(float value)? or do you have any suggestions? thank you. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub<#1>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ANIYGOHKMTNNJ3LTP2JAPCTR7ECAJANCNFSM4PVFPOMA>.