pbrr

R Code for analysis of PBR Tier System simulations.

Typical source() order for running scripts would be:

1. PBR_FileIO.R

• The write_inits() function is relied on heavily for batching runs of simulations.

2. PBR_create_input_files.R

• Requires the boiler plate input.par file located here
• See the Notes in the header comments for the naming convention of input files for each trial.
• Please note the comment regarding directory structure next to the initialization of the code_dir variable. This could be improved, but for now, it will require modification by the user to match where the code resides in their personal directories.

3. PBR_batch.R

• Contains functions for running batches of simulations given lists of input file names.
• Note: These functions were developed to run under Mac OS X, and the system() calls would likely need to be modified under a different OS.
• Future versions of these functions could be made more cross-platform friendly by making the system() calls conditional on the value returned from, for example .Platform$OS.type

4. PBR_fortran_output.R

• Contains functions for compiling depletion statistics and plotting.

5. PBR_Fortran_controller.R

• Runs scripts above, compiles depletion statistics and creates some plots.