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1. gillespy gillespy Public

   A Python package for stochastic model building and simulation. Published as Abel et al., IEEE Life Sci Lett 2017.

   Python 6 17

2. per2py per2py Public

   Python code for automated analysis of Per2::iLuc bioluminescence data. Published in Shan, Abel, ... Doyle III, Takahashi, Neuron 2021.

   Python 2

3. GABAergic_unconsciousness GABAergic_unconsciousness Public

   Code for classification of unconsciousness during GABAergic anesthesia. Results in Abel, Badgeley, ... Purdon, Brown, PLoS ONE.

   Python 1 1

4. ferreira_malaria_model ferreira_malaria_model Public

   This code performs the ODE modeling from Rijo-Ferreira et al., Science 2020

   Python

5. mazuski_vip_firing_optogenetics mazuski_vip_firing_optogenetics Public

   Rough code and data for spike pattern ID and in vivo analysis used in Mazuski, Abel, ... Doyle III, Herzog. Neuron, 2018

   Python 2

6. dissertation dissertation Public

   My doctoral dissertation TeX source files.

   TeX