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Models hub internal #390

Merged
merged 107 commits into from
Jun 15, 2023
Merged

Models hub internal #390

merged 107 commits into from
Jun 15, 2023

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gokhanturer
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  • Added latest models and pipelines

jsl-models and others added 30 commits March 29, 2023 18:20
@jsl-models @Ahmetemintek
2023-03-29-icd10cm_resolver_pipeline_en (#44)
99dfc58 
* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
@jsl-models @Cabir40
2023-03-29-oncology_general_pipeline_en (#46)
9f49515 
* Add model 2023-03-29-oncology_general_pipeline_en

* Add model 2023-03-29-oncology_diagnosis_pipeline_en

* Add model 2023-03-29-oncology_biomarker_pipeline_en

* Add model 2023-03-29-icd10_icd9_mapping_en

* Add model 2023-03-29-icd10cm_snomed_mapping_en

* Add model 2023-03-29-icd10cm_umls_mapping_en

* Add model 2023-03-29-icd9_resolver_pipeline_en

* Add model 2023-03-29-icdo_snomed_mapping_en

* Add model 2023-03-29-mesh_umls_mapping_en

* Add model 2023-03-29-rxnorm_ndc_mapping_en

* Add model 2023-03-29-rxnorm_umls_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icdo_mapping_en

* Add model 2023-03-29-oncology_therapy_pipeline_en

* Add model 2023-03-29-snomed_umls_mapping_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
@jsl-models @Ahmetemintek
2023-03-29-icd10cm_resolver_pipeline_en (#45)
47b53e5 
* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-umls_drug_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
@jsl-models @Cabir40
Add model 2023-03-30-text_generator_biomedical_biogpt_en (#48)
89a37a9 
Co-authored-by: Cabir40 <cabir4006@gmail.com>
@jsl-models @Cabir40
2023-03-30-summarizer_generic_jsl_en (#49)
ef6c670 
* Add model 2023-03-30-summarizer_generic_jsl_en

* Update 2023-03-30-summarizer_generic_jsl_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
@jsl-models
Add model 2023-03-30-summarizer_clinical_jsl_augmented_en (#51)
705d996
@Cabir40
Update 2023-03-30-summarizer_generic_jsl_en.md
e026630
@Cabir40
Update 2023-03-30-text_generator_biomedical_biogpt_en.md
1d7d282
@Cabir40
Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md
e50aa97
@jsl-models @Damla-Gurbaz
@Cabir40 @vkocaman
2023-04-02-ner_jsl_limited_80p_for_benchmarks_en (#58)
d763504 
* Add model 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Veysel Kocaman <vkocaman@gmail.com>
@jsl-models @mauro-nievoff @Cabir40
2023-03-30-ner_vop_wip_en (#52)
b3aad55 
* Add model 2023-03-30-ner_vop_wip_en

* Update 2023-03-30-ner_vop_wip_en.md

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
@jsl-models @Ahmetemintek
2023-03-30-umls_clinical_findings_resolver_pipeline_en (#47)
66714a8 
* Add model 2023-03-30-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-03-30-cvx_resolver_pipeline_en

* Add model 2023-03-30-umls_disease_syndrome_resolver_pipeline_en

* Add model 2023-03-30-umls_major_concepts_resolver_pipeline_en

* Add model 2023-03-30-umls_drug_substance_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_transform_pipeline_en

* Add model 2023-03-31-spellcheck_clinical_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
@jsl-models
Add model 2023-04-03-ner_oncology_limited_80p_for_benchmarks_en (#61)
1b7962c
@jsl-models
2023-04-03-text_generator_biomedical_biogpt_base_en (#60)
e0cf40b
@Cabir40
Delete 2023-03-30-text_generator_biomedical_biogpt_en.md
87530f7
@Cabir40
Update 2023-04-03-text_generator_generic_flan_base_en.md
3b6340f
@Damla-Gurbaz
Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md
3af116d
@Damla-Gurbaz
Update 2023-03-30-summarizer_generic_jsl_en.md
355cebd
@jsl-models
Add model 2023-04-04-text_generator_generic_flan_t5_large_en (#64)
67a6053
@jsl-models @Cabir40
2023-04-07-embeddings_clinical_medium_en (#75)
8f72d5e 
* Add model 2023-04-07-embeddings_clinical_medium_en

* Update 2023-04-07-embeddings_clinical_medium_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
@jsl-models
Add model 2023-04-07-embeddings_clinical_large_en (#79)
4893282
@jsl-models @hsaglamlar @Cabir40
2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en (
f4b1fff 
#81)

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en

* Add model 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en

* Add model 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en

* added missing md files

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en

* Delete 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
@jsl-models @SKocer
2023-04-10-medication_resolver_pipeline_en (#83)
614ab78 
* Add model 2023-04-10-medication_resolver_pipeline_en

* Add model 2023-04-11-medication_resolver_transform_pipeline_en

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>
@jsl-models @Cabir40
2023-04-11-umls_clinical_findings_resolver_pipeline_en (#89)
c52366d 
* Add model 2023-04-11-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-04-11-umls_drug_substance_resolver_pipeline_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
@jsl-models @mauro-nievoff
2023-04-12-ner_vop_emb_clinical_large_wip_en (#100)
c7a28bf 
* Add model 2023-04-12-ner_vop_emb_clinical_large_wip_en

* Add model 2023-04-12-ner_vop_emb_clinical_medium_wip_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
@jsl-models @Cabir40
Add model 2023-04-12-biogpt_chat_jsl_en (#103)
181bf2e 
Co-authored-by: Cabir40 <cabir4006@gmail.com>
@jsl-models @Meryem1425
2023-04-12-ner_oncology_emb_clinical_large_en (#101)
2e68e41 
* Add model 2023-04-12-ner_oncology_emb_clinical_large_en

* Add model 2023-04-12-ner_oncology_emb_clinical_medium_en

---------

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
@jsl-models @gokhanturer
2023-04-12-ner_posology_emb_clinical_large_en (#99)
355024a 
* Add model 2023-04-12-ner_posology_emb_clinical_large_en

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed the given sample text

* Add model 2023-04-12-ner_posology_emb_clinical_medium_en

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Corrected thr code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_large_en

* Update 2023-04-12-ner_deid_large_emb_clinical_large_en.md

Corrected the code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_medium_en

* Update 2023-04-12-ner_deid_large_emb_clinical_medium_en.md

corrected the python code block view

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Fixed scala code

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed scala code

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>
@jsl-models @Damla-Gurbaz
2023-04-12-ner_jsl_emb_clinical_medium_en (#98)
8087846 
* Add model 2023-04-12-ner_jsl_emb_clinical_medium_en

* Add model 2023-04-12-ner_jsl_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
@jsl-models @hsaglamlar
2023-04-12-ner_sdoh_emb_clinical_medium_wip_en (#96)
641dbf1 
* Add model 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en

* Add model 2023-04-12-ner_sdoh_emb_clinical_large_wip_en

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
jsl-models and others added 27 commits May 30, 2023 18:17
@jsl-models @Ahmetemintek @muhammetsnts
2023-05-26-icd10cm_billable_hcc_mapper_en (#266)
67951fe 
* Add model 2023-05-26-icd10cm_billable_hcc_mapper_en

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

md file was fixed based on the feedback.

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>
@jsl-models
2023-05-16-classifier_logreg_ade_en (#232)
144bb51
@jsl-models
2023-05-30-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_m…
6f5aa87 
…li_en (#299)
@jsl-models
2023-05-30-icd10cm_mapper_en (#295)
d6cb27d
@jsl-models @Ahmetemintek
2023-05-31-sbiobertresolve_hcc_augmented_en (#304)
29e074c 
* Add model 2023-05-31-sbiobertresolve_hcc_augmented_en

* Update 2023-05-31-sbiobertresolve_hcc_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
@jsl-models @Damla-Gurbaz
2023-05-31-summarizer_clinical_guidelines_large_pipeline_en (#305)
562b89b 
* Add model 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en

* Add model 2023-05-31-summarizer_radiology_pipeline_en

* Add model 2023-05-31-summarizer_clinical_questions_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Delete 2023-05-31-summarizer_biomedical_pubmed_pipeline_en.md

* Add model 2023-05-31-summarizer_generic_jsl_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_augmented_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>
@jsl-models
2023-05-31-sbertresolve_icd10cm_slim_billable_hcc_en (#302)
db96f5d
@jsl-models
2023-05-31-sbertresolve_icd10cm_augmented_en (#306)
3cfefbd
@Cabir40
Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md
96aff69
@jsl-models @mellahysf
2023-05-31-ner_deid_subentity_pipeline_ar (#313)
48fa6cb 
* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
@jsl-models @mellahysf @Cabir40
2023-05-31-ner_deid_subentity_pipeline_ar (#313)
9c67584 
* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

* Update 2023-05-31-ner_deid_subentity_pipeline_ar.md

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
@Cabir40
Merge branch 'main' into models_hub_internal
688bb13
@jsl-models
2023-06-02-ner_chemicals_emb_clinical_large_en (#327)
c11c684
@jsl-models
Add model 2023-06-06-ner_deid_generic_pipeline_ar (#351)
a044ab7
@jsl-models
2023-06-06-ner_vop_en (#350)
feadd0f
@jsl-models @Cabir40
Add model 2023-06-08-ner_demographic_extended_healthcare_en (#359)
69a841e 
Co-authored-by: Cabir40 <cabir4006@gmail.com>
@jsl-models @Damla-Gurbaz
2023-06-06-summarizer_clinical_laymen_pipeline_en (#352)
a78653a 
* Add model 2023-06-06-summarizer_clinical_laymen_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-07-bert_token_classifier_ner_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
@jsl-models @ahmedlone127
Add model 2023-06-11-ner_profiling_biobert_en (#362)
a908059 
Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>
@jsl-models @mauro-nievoff
2023-06-09-ner_vop_pipeline_en (#361)
483c4a0 
* Add model 2023-06-09-ner_vop_pipeline_en

* Add model 2023-06-09-ner_vop_anatomy_pipeline_en

* Add model 2023-06-10-ner_vop_clinical_dept_pipeline_en

* Add model 2023-06-10-ner_vop_demographic_pipeline_en

* Add model 2023-06-10-ner_vop_problem_pipeline_en

* Add model 2023-06-10-ner_vop_problem_reduced_pipeline_en

* Add model 2023-06-10-ner_vop_temporal_pipeline_en

* Add model 2023-06-10-ner_vop_test_pipeline_en

* Add model 2023-06-10-ner_vop_treatment_pipeline_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
@jsl-models @hsaglamlar
Add model 2023-06-13-ner_sdoh_en (#370)
191be79 
Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
@jsl-models @C-K-Loan
Add model 2023-06-13-icd10cm_umls_mapping_en (#373)
1bee843 
Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>
@jsl-models @ahmedlone127
2023-06-13-ner_profiling_biobert_en (#368)
a9172fc 
* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-explain_clinical_doc_carp_en

* Add model 2023-06-13-explain_clinical_doc_era_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-explain_clinical_doc_medication_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-oncology_general_pipeline_en

* Add model 2023-06-13-oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-13-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-13-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_posology_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-13-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-13-ner_clinical_bert_pipeline_ro

* Add model 2023-06-13-ner_clinical_pipeline_ro

* Add model 2023-06-13-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-ner_covid_trials_pipeline_en

* Add model 2023-06-13-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_generic_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_pipeline_ro

* Add model 2023-06-13-ner_living_species_300_pipeline_es

* Add model 2023-06-13-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-13-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_oncology_demographics_pipeline_en

* Add model 2023-06-13-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-13-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-13-ner_oncology_test_pipeline_en

* Add model 2023-06-13-ner_oncology_therapy_pipeline_en

* Add model 2023-06-13-ner_oncology_tnm_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-13-ner_pharmacology_pipeline_es

* Add model 2023-06-13-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-13-ner_deid_generic_pipeline_it

* Add model 2023-06-13-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_it

* Add model 2023-06-13-ner_deid_synthetic_pipeline_en

* Add model 2023-06-13-ner_living_species_bert_pipeline_es

* Add model 2023-06-13-ner_living_species_bert_pipeline_fr

* Add model 2023-06-13-ner_living_species_bert_pipeline_it

* Add model 2023-06-13-ner_living_species_bert_pipeline_pt

* Add model 2023-06-13-ner_living_species_bert_pipeline_ro

* Add model 2023-06-13-ner_living_species_pipeline_ca

* Add model 2023-06-13-ner_living_species_pipeline_en

* Add model 2023-06-13-ner_living_species_pipeline_es

* Add model 2023-06-13-ner_living_species_pipeline_fr

* Add model 2023-06-13-ner_living_species_pipeline_gl

* Add model 2023-06-13-ner_living_species_pipeline_it

* Add model 2023-06-13-ner_living_species_pipeline_pt

* Add model 2023-06-13-ner_living_species_roberta_pipeline_es

* Add model 2023-06-13-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-13-ner_chemd_clinical_pipeline_en

* Add model 2023-06-13-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-13-ner_supplement_clinical_pipeline_en

* Add model 2023-06-13-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-13-ner_diag_proc_pipeline_es

* Add model 2023-06-13-ner_healthcare_pipeline_de

* Add model 2023-06-13-ner_healthcare_slim_pipeline_de

* Add model 2023-06-13-ner_neoplasms_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-13-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-13-ner_living_species_biobert_pipeline_en

* Add model 2023-06-13-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-13-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_ncbi_disease_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>
@jsl-models @C-K-Loan
2023-06-13-ner_profiling_biobert_en (#375)
db6d90b 
* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>
@jsl-models
2023-06-13-bert_sequence_classifier_vop_drug_side_effect_en (#376)
dc2c0ad
@jsl-models
Add model 2023-06-14-clinical_deidentification_ar (#382)
31917c6
@jsl-models @Cabir40
2023-06-13-recognize_entities_posology_en (#378)
03d9c6f 
* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
@jsl-models
2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en (#380)
1d47876
@vkocaman vkocaman merged commit 7fd9f50 into main Jun 15, 2023
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@gokhanturer @Cabir40 @vkocaman @jsl-models @Damla-Gurbaz