Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en #380

Merged
merged 10 commits into from
Jun 14, 2023
Merged

2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en #380

merged 10 commits into from
Jun 14, 2023

Conversation

jsl-models
Copy link
Collaborator

No description provided.

@vkocaman vkocaman merged commit 1d47876 into models_hub_internal Jun 14, 2023
vkocaman added a commit that referenced this pull request Jun 15, 2023
@gokhanturer @jsl-models
@Ahmetemintek @Cabir40 @Damla-Gurbaz @vkocaman @mauro-nievoff @hsaglamlar @SKocer @Meryem1425 @HashamUlHaq @andrei9825 @gpirge @muhammetsnts @mellahysf @dcecchini @ahmedlone127 @C-K-Loan
Models hub internal (#390)
7fd9f50 
* 2023-03-29-icd10cm_resolver_pipeline_en (#44)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-03-29-oncology_general_pipeline_en (#46)

* Add model 2023-03-29-oncology_general_pipeline_en

* Add model 2023-03-29-oncology_diagnosis_pipeline_en

* Add model 2023-03-29-oncology_biomarker_pipeline_en

* Add model 2023-03-29-icd10_icd9_mapping_en

* Add model 2023-03-29-icd10cm_snomed_mapping_en

* Add model 2023-03-29-icd10cm_umls_mapping_en

* Add model 2023-03-29-icd9_resolver_pipeline_en

* Add model 2023-03-29-icdo_snomed_mapping_en

* Add model 2023-03-29-mesh_umls_mapping_en

* Add model 2023-03-29-rxnorm_ndc_mapping_en

* Add model 2023-03-29-rxnorm_umls_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icdo_mapping_en

* Add model 2023-03-29-oncology_therapy_pipeline_en

* Add model 2023-03-29-snomed_umls_mapping_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-29-icd10cm_resolver_pipeline_en (#45)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-umls_drug_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-03-30-text_generator_biomedical_biogpt_en (#48)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-30-summarizer_generic_jsl_en (#49)

* Add model 2023-03-30-summarizer_generic_jsl_en

* Update 2023-03-30-summarizer_generic_jsl_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-03-30-summarizer_clinical_jsl_augmented_en (#51)

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Update 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en (#58)

* Add model 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Veysel Kocaman <vkocaman@gmail.com>

* 2023-03-30-ner_vop_wip_en (#52)

* Add model 2023-03-30-ner_vop_wip_en

* Update 2023-03-30-ner_vop_wip_en.md

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-03-30-umls_clinical_findings_resolver_pipeline_en (#47)

* Add model 2023-03-30-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-03-30-cvx_resolver_pipeline_en

* Add model 2023-03-30-umls_disease_syndrome_resolver_pipeline_en

* Add model 2023-03-30-umls_major_concepts_resolver_pipeline_en

* Add model 2023-03-30-umls_drug_substance_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_transform_pipeline_en

* Add model 2023-03-31-spellcheck_clinical_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-03-ner_oncology_limited_80p_for_benchmarks_en (#61)

* 2023-04-03-text_generator_biomedical_biogpt_base_en (#60)

* Delete 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-04-03-text_generator_generic_flan_base_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Add model 2023-04-04-text_generator_generic_flan_t5_large_en (#64)

* 2023-04-07-embeddings_clinical_medium_en (#75)

* Add model 2023-04-07-embeddings_clinical_medium_en

* Update 2023-04-07-embeddings_clinical_medium_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-04-07-embeddings_clinical_large_en (#79)

* 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en (#81)

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en

* Add model 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en

* Add model 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en

* added missing md files

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en

* Delete 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-04-10-medication_resolver_pipeline_en (#83)

* Add model 2023-04-10-medication_resolver_pipeline_en

* Add model 2023-04-11-medication_resolver_transform_pipeline_en

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>

* 2023-04-11-umls_clinical_findings_resolver_pipeline_en (#89)

* Add model 2023-04-11-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-04-11-umls_drug_substance_resolver_pipeline_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_vop_emb_clinical_large_wip_en (#100)

* Add model 2023-04-12-ner_vop_emb_clinical_large_wip_en

* Add model 2023-04-12-ner_vop_emb_clinical_medium_wip_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-04-12-biogpt_chat_jsl_en (#103)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_oncology_emb_clinical_large_en (#101)

* Add model 2023-04-12-ner_oncology_emb_clinical_large_en

* Add model 2023-04-12-ner_oncology_emb_clinical_medium_en

---------

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-12-ner_posology_emb_clinical_large_en (#99)

* Add model 2023-04-12-ner_posology_emb_clinical_large_en

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed the given sample text

* Add model 2023-04-12-ner_posology_emb_clinical_medium_en

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Corrected thr code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_large_en

* Update 2023-04-12-ner_deid_large_emb_clinical_large_en.md

Corrected the code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_medium_en

* Update 2023-04-12-ner_deid_large_emb_clinical_medium_en.md

corrected the python code block view

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Fixed scala code

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed scala code

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-04-12-ner_jsl_emb_clinical_medium_en (#98)

* Add model 2023-04-12-ner_jsl_emb_clinical_medium_en

* Add model 2023-04-12-ner_jsl_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en (#96)

* Add model 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en

* Add model 2023-04-12-ner_sdoh_emb_clinical_large_wip_en

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* 2023-04-13-ndc_hcpcs_mapper_en (#113)

* Add model 2023-04-13-ndc_hcpcs_mapper_en

* Add model 2023-04-13-hcpcs_ndc_mapper_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-13-medication_resolver_pipeline_en (#110)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-04-17-ner_sdoh_emb_clinical_large_wip_en (#126)

* Add model 2023-04-18-biogpt_chat_jsl_conversational_en (#130)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-04-20-explain_clinical_doc_medication_en (#140)

* Add model 2023-04-20-explain_clinical_doc_medication_en

* Add model 2023-04-20-explain_clinical_doc_radiology_en

* Add model 2023-04-20-explain_clinical_doc_ade_en

* Add model 2023-04-20-explain_clinical_doc_era_en

* Add model 2023-04-20-explain_clinical_doc_carp_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-23-summarizer_jsl_radiology_en (#145)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-20-ner_vop_anatomy_wip_en (#139)

* 2023-04-26-ner_profiling_biobert_en (#151)

* 2023-04-27-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#168)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en (#170)

* Add model 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_coverage_sbiobert_cased_mli_en

* Update 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en.md

* Update 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Halil Saglamlar <47859156+hsaglamlar@users.noreply.github.com>

* Add model 2023-05-01-bert_token_classifier_ner_jsl_en (#181)

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-04-28-icd10cm_resolver_pipeline_en (#174)

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-28-ner_profiling_biobert_en (#171)

* Add model 2023-04-28-ner_profiling_biobert_en

* Add model 2023-04-28-ner_profiling_clinical_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-05-02-ner_demographic_extended_en (#187)

Co-authored-by: andrei9825 <andrei@johnsnowlabs.com>

* Add model 2023-05-04-classifier_logreg_ade_en (#194)

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-04-ner_profiling_clinical_en (#196)

* Update 2023-05-04-bert_token_classifier_ner_jsl_en.md

Add benchmark

* fixed typos on 2023-05-04-bert_token_classifier_ner_jsl_en.md

* 2023-05-05-ner_clinical_de (#199)

* 2023-05-04-classifierml_ade_en (#197)

* 2023-05-08-summarizer_clinical_key_facts_en (#201)

* Add model 2023-05-08-summarizer_clinical_key_facts_en

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

changed model name

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

Changed description

---------

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* renamed md file

* 2023-05-09-generic_logreg_classifier_ade_en (#202)

* Add model 2023-05-09-generic_logreg_classifier_ade_en

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

corrected the indentations of the Python codes

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

changed the title

* Add model 2023-05-09-generic_svm_classifier_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>
Co-authored-by: gursev.pirge <67619330+gpirge@users.noreply.github.com>

* Add model 2023-05-08-ner_clinical_de (#200)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-05-11-biogpt_chat_jsl_conditions_en (#204)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-05-11-classifier_logreg_ade_en (#209)

* Add model 2023-05-11-classifier_logreg_ade_en

* Add model 2023-05-11-classifierml_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-12-ner_abbreviation_emb_clinical_medium_en (#214)

* Add model 2023-05-12-ner_abbreviation_emb_clinical_medium_en

* Add model 2023-05-12-ner_abbreviation_emb_clinical_large_en

* Update 2023-05-12-ner_abbreviation_emb_clinical_medium_en.md

* Update 2023-05-12-ner_abbreviation_emb_clinical_large_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-11-icd10cm_cause_claim_mapper_en (#210)

* Add model 2023-05-11-icd10cm_cause_claim_mapper_en

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The provided example is updated based on the review. Additional explanation is added for the case where there is no equivalent claim analysis code.

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The output results are changed.

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>
Co-authored-by: Samed K <110497137+SKocer@users.noreply.github.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* Add model 2023-05-13-spellcheck_drug_norvig_en (#220)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-15-ner_anatomy_emb_clinical_medium_en (#225)

* Add model 2023-05-15-ner_anatomy_emb_clinical_medium_en

* Add model 2023-05-15-ner_anatomy_emb_clinical_large_en

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-15-biogpt_pubmed_qa_en (#227)

* Add model 2023-05-15-biogpt_pubmed_qa_en

* Update 2023-05-15-biogpt_pubmed_qa_en.md

* Add model 2023-05-15-flan_t5_base_jsl_qa_en

* Update 2023-05-15-flan_t5_base_jsl_qa_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-05-17-medical_qa_biogpt_en (#234)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-20-explain_clinical_doc_era_en.md

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-28-icd10cm_resolver_pipeline_en.md

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-20-sbiobertresolve_icd10cm_augmented_en (#243)

* Add model 2023-05-20-sbiobertresolve_icd10cm_augmented_en

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-21-ner_ade_emb_clinical_medium_en (#244)

* Add model 2023-05-21-ner_ade_emb_clinical_medium_en

* Add model 2023-05-21-ner_ade_emb_clinical_large_en

* Add model 2023-05-24-ner_cellular_emb_clinical_medium_en

* Add model 2023-05-24-ner_cellular_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-05-23-ner_bacterial_species_emb_clinical_medium_en (#252)

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_medium_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_large_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-19-ner_vop_wip_en (#242)

* Add model 2023-05-19-ner_vop_wip_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_large_en

* Add model 2023-05-19-ner_vop_anatomy_wip_en

* Add model 2023-05-19-ner_vop_clinical_dept_wip_en

* Add model 2023-05-19-ner_vop_demographic_wip_en

* Add model 2023-05-19-ner_vop_problem_reduced_wip_en

* Add model 2023-05-19-ner_vop_problem_wip_en

* Add model 2023-05-19-ner_vop_temporal_wip_en

* Add model 2023-05-19-ner_vop_test_wip_en

* Add model 2023-05-19-ner_vop_treatment_wip_en

* Update 2023-05-19-ner_vop_anatomy_wip_en.md

Fixing wrong special character (").

* Update 2023-05-19-ner_vop_treatment_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_test_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_temporal_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_reduced_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_demographic_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_clinical_dept_wip_en.md

Adding sample text.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changing model name ner_vop_wip_embeddings_clinical_medium to ner_vop_wip_emb_clinical_medium.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changing model name ner_vop_wip_embeddings_clinical_large to ner_vop_wip_emb_clinical_large.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changed s3 link.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changed s3 link.

* Add model 2023-05-24-bert_sequence_classifier_vop_side_effect_en

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: mauro-nievoff <55700369+mauro-nievoff@users.noreply.github.com>

* 2023-05-24-sbiobertresolve_icd10cm_generalised_augmented_en (#256)

* 2023-05-29-summarizer_clinical_jsl_pipeline_en (#282)

* 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar (#283)

* Add model 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar

* Update 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar.md

* update md file name

* Add model 2023-05-30-ner_deid_generic_ar

* fixed typos

* fixed typos

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-29-summarizer_clinical_layman_en (#280)

* Add model 2023-05-29-summarizer_clinical_layman_en

* Update 2023-05-29-summarizer_clinical_layman_en.md

* update model name

* Added English names to the example text

---------

Co-authored-by: dcecchini <dadachini@hotmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-26-icd10cm_billable_hcc_mapper_en (#266)

* Add model 2023-05-26-icd10cm_billable_hcc_mapper_en

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

md file was fixed based on the feedback.

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-16-classifier_logreg_ade_en (#232)

* 2023-05-30-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#299)

* 2023-05-30-icd10cm_mapper_en (#295)

* 2023-05-31-sbiobertresolve_hcc_augmented_en (#304)

* Add model 2023-05-31-sbiobertresolve_hcc_augmented_en

* Update 2023-05-31-sbiobertresolve_hcc_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en (#305)

* Add model 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en

* Add model 2023-05-31-summarizer_radiology_pipeline_en

* Add model 2023-05-31-summarizer_clinical_questions_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Delete 2023-05-31-summarizer_biomedical_pubmed_pipeline_en.md

* Add model 2023-05-31-summarizer_generic_jsl_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_augmented_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-31-sbertresolve_icd10cm_slim_billable_hcc_en (#302)

* 2023-05-31-sbertresolve_icd10cm_augmented_en (#306)

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

* Update 2023-05-31-ner_deid_subentity_pipeline_ar.md

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-06-02-ner_chemicals_emb_clinical_large_en (#327)

* Add model 2023-06-06-ner_deid_generic_pipeline_ar (#351)

* 2023-06-06-ner_vop_en (#350)

* Add model 2023-06-08-ner_demographic_extended_healthcare_en (#359)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-06-summarizer_clinical_laymen_pipeline_en (#352)

* Add model 2023-06-06-summarizer_clinical_laymen_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-07-bert_token_classifier_ner_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-06-11-ner_profiling_biobert_en (#362)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-09-ner_vop_pipeline_en (#361)

* Add model 2023-06-09-ner_vop_pipeline_en

* Add model 2023-06-09-ner_vop_anatomy_pipeline_en

* Add model 2023-06-10-ner_vop_clinical_dept_pipeline_en

* Add model 2023-06-10-ner_vop_demographic_pipeline_en

* Add model 2023-06-10-ner_vop_problem_pipeline_en

* Add model 2023-06-10-ner_vop_problem_reduced_pipeline_en

* Add model 2023-06-10-ner_vop_temporal_pipeline_en

* Add model 2023-06-10-ner_vop_test_pipeline_en

* Add model 2023-06-10-ner_vop_treatment_pipeline_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-06-13-ner_sdoh_en (#370)

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* Add model 2023-06-13-icd10cm_umls_mapping_en (#373)

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#368)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-explain_clinical_doc_carp_en

* Add model 2023-06-13-explain_clinical_doc_era_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-explain_clinical_doc_medication_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-oncology_general_pipeline_en

* Add model 2023-06-13-oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-13-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-13-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_posology_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-13-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-13-ner_clinical_bert_pipeline_ro

* Add model 2023-06-13-ner_clinical_pipeline_ro

* Add model 2023-06-13-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-ner_covid_trials_pipeline_en

* Add model 2023-06-13-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_generic_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_pipeline_ro

* Add model 2023-06-13-ner_living_species_300_pipeline_es

* Add model 2023-06-13-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-13-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_oncology_demographics_pipeline_en

* Add model 2023-06-13-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-13-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-13-ner_oncology_test_pipeline_en

* Add model 2023-06-13-ner_oncology_therapy_pipeline_en

* Add model 2023-06-13-ner_oncology_tnm_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-13-ner_pharmacology_pipeline_es

* Add model 2023-06-13-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-13-ner_deid_generic_pipeline_it

* Add model 2023-06-13-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_it

* Add model 2023-06-13-ner_deid_synthetic_pipeline_en

* Add model 2023-06-13-ner_living_species_bert_pipeline_es

* Add model 2023-06-13-ner_living_species_bert_pipeline_fr

* Add model 2023-06-13-ner_living_species_bert_pipeline_it

* Add model 2023-06-13-ner_living_species_bert_pipeline_pt

* Add model 2023-06-13-ner_living_species_bert_pipeline_ro

* Add model 2023-06-13-ner_living_species_pipeline_ca

* Add model 2023-06-13-ner_living_species_pipeline_en

* Add model 2023-06-13-ner_living_species_pipeline_es

* Add model 2023-06-13-ner_living_species_pipeline_fr

* Add model 2023-06-13-ner_living_species_pipeline_gl

* Add model 2023-06-13-ner_living_species_pipeline_it

* Add model 2023-06-13-ner_living_species_pipeline_pt

* Add model 2023-06-13-ner_living_species_roberta_pipeline_es

* Add model 2023-06-13-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-13-ner_chemd_clinical_pipeline_en

* Add model 2023-06-13-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-13-ner_supplement_clinical_pipeline_en

* Add model 2023-06-13-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-13-ner_diag_proc_pipeline_es

* Add model 2023-06-13-ner_healthcare_pipeline_de

* Add model 2023-06-13-ner_healthcare_slim_pipeline_de

* Add model 2023-06-13-ner_neoplasms_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-13-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-13-ner_living_species_biobert_pipeline_en

* Add model 2023-06-13-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-13-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_ncbi_disease_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#375)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_drug_side_effect_en (#376)

* Add model 2023-06-14-clinical_deidentification_ar (#382)

* 2023-06-13-recognize_entities_posology_en (#378)

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en (#380)

---------

Co-authored-by: jsl-models <74001263+jsl-models@users.noreply.github.com>
Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Veysel Kocaman <vkocaman@gmail.com>
Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>
Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>
Co-authored-by: SKocer <samedkocer22@gmail.com>
Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>
Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>
Co-authored-by: Halil Saglamlar <47859156+hsaglamlar@users.noreply.github.com>
Co-authored-by: andrei9825 <andrei@johnsnowlabs.com>
Co-authored-by: gpirge <gursev.pirge@gmail.com>
Co-authored-by: gursev.pirge <67619330+gpirge@users.noreply.github.com>
Co-authored-by: Samed K <110497137+SKocer@users.noreply.github.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>
Co-authored-by: mauro-nievoff <55700369+mauro-nievoff@users.noreply.github.com>
Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: dcecchini <dadachini@hotmail.com>
Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>
Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>
vkocaman added a commit that referenced this pull request Aug 2, 2023
@Cabir40 @jsl-models
@Ahmetemintek @Damla-Gurbaz @vkocaman @mauro-nievoff @hsaglamlar @SKocer @Meryem1425 @gokhanturer @HashamUlHaq @andrei9825 @gpirge @muhammetsnts @mellahysf @dcecchini @ahmedlone127 @C-K-Loan @bunyamin-polat @ArshaanNazir @RakshitKhajuria @Prikshit7766 @ahmet-mesut
Models hub internal (#489)
b8cb6e5 
* 2023-03-29-icd10cm_resolver_pipeline_en (#44)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-03-29-oncology_general_pipeline_en (#46)

* Add model 2023-03-29-oncology_general_pipeline_en

* Add model 2023-03-29-oncology_diagnosis_pipeline_en

* Add model 2023-03-29-oncology_biomarker_pipeline_en

* Add model 2023-03-29-icd10_icd9_mapping_en

* Add model 2023-03-29-icd10cm_snomed_mapping_en

* Add model 2023-03-29-icd10cm_umls_mapping_en

* Add model 2023-03-29-icd9_resolver_pipeline_en

* Add model 2023-03-29-icdo_snomed_mapping_en

* Add model 2023-03-29-mesh_umls_mapping_en

* Add model 2023-03-29-rxnorm_ndc_mapping_en

* Add model 2023-03-29-rxnorm_umls_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icdo_mapping_en

* Add model 2023-03-29-oncology_therapy_pipeline_en

* Add model 2023-03-29-snomed_umls_mapping_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-29-icd10cm_resolver_pipeline_en (#45)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-umls_drug_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-03-30-text_generator_biomedical_biogpt_en (#48)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-30-summarizer_generic_jsl_en (#49)

* Add model 2023-03-30-summarizer_generic_jsl_en

* Update 2023-03-30-summarizer_generic_jsl_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-03-30-summarizer_clinical_jsl_augmented_en (#51)

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Update 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en (#58)

* Add model 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Veysel Kocaman <vkocaman@gmail.com>

* 2023-03-30-ner_vop_wip_en (#52)

* Add model 2023-03-30-ner_vop_wip_en

* Update 2023-03-30-ner_vop_wip_en.md

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-03-30-umls_clinical_findings_resolver_pipeline_en (#47)

* Add model 2023-03-30-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-03-30-cvx_resolver_pipeline_en

* Add model 2023-03-30-umls_disease_syndrome_resolver_pipeline_en

* Add model 2023-03-30-umls_major_concepts_resolver_pipeline_en

* Add model 2023-03-30-umls_drug_substance_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_transform_pipeline_en

* Add model 2023-03-31-spellcheck_clinical_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-03-ner_oncology_limited_80p_for_benchmarks_en (#61)

* 2023-04-03-text_generator_biomedical_biogpt_base_en (#60)

* Delete 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-04-03-text_generator_generic_flan_base_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Add model 2023-04-04-text_generator_generic_flan_t5_large_en (#64)

* 2023-04-07-embeddings_clinical_medium_en (#75)

* Add model 2023-04-07-embeddings_clinical_medium_en

* Update 2023-04-07-embeddings_clinical_medium_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-04-07-embeddings_clinical_large_en (#79)

* 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en (#81)

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en

* Add model 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en

* Add model 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en

* added missing md files

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en

* Delete 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-04-10-medication_resolver_pipeline_en (#83)

* Add model 2023-04-10-medication_resolver_pipeline_en

* Add model 2023-04-11-medication_resolver_transform_pipeline_en

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>

* 2023-04-11-umls_clinical_findings_resolver_pipeline_en (#89)

* Add model 2023-04-11-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-04-11-umls_drug_substance_resolver_pipeline_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_vop_emb_clinical_large_wip_en (#100)

* Add model 2023-04-12-ner_vop_emb_clinical_large_wip_en

* Add model 2023-04-12-ner_vop_emb_clinical_medium_wip_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-04-12-biogpt_chat_jsl_en (#103)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_oncology_emb_clinical_large_en (#101)

* Add model 2023-04-12-ner_oncology_emb_clinical_large_en

* Add model 2023-04-12-ner_oncology_emb_clinical_medium_en

---------

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-12-ner_posology_emb_clinical_large_en (#99)

* Add model 2023-04-12-ner_posology_emb_clinical_large_en

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed the given sample text

* Add model 2023-04-12-ner_posology_emb_clinical_medium_en

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Corrected thr code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_large_en

* Update 2023-04-12-ner_deid_large_emb_clinical_large_en.md

Corrected the code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_medium_en

* Update 2023-04-12-ner_deid_large_emb_clinical_medium_en.md

corrected the python code block view

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Fixed scala code

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed scala code

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-04-12-ner_jsl_emb_clinical_medium_en (#98)

* Add model 2023-04-12-ner_jsl_emb_clinical_medium_en

* Add model 2023-04-12-ner_jsl_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en (#96)

* Add model 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en

* Add model 2023-04-12-ner_sdoh_emb_clinical_large_wip_en

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* 2023-04-13-ndc_hcpcs_mapper_en (#113)

* Add model 2023-04-13-ndc_hcpcs_mapper_en

* Add model 2023-04-13-hcpcs_ndc_mapper_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-13-medication_resolver_pipeline_en (#110)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-04-17-ner_sdoh_emb_clinical_large_wip_en (#126)

* Add model 2023-04-18-biogpt_chat_jsl_conversational_en (#130)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-04-20-explain_clinical_doc_medication_en (#140)

* Add model 2023-04-20-explain_clinical_doc_medication_en

* Add model 2023-04-20-explain_clinical_doc_radiology_en

* Add model 2023-04-20-explain_clinical_doc_ade_en

* Add model 2023-04-20-explain_clinical_doc_era_en

* Add model 2023-04-20-explain_clinical_doc_carp_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-23-summarizer_jsl_radiology_en (#145)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-20-ner_vop_anatomy_wip_en (#139)

* 2023-04-26-ner_profiling_biobert_en (#151)

* 2023-04-27-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#168)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en (#170)

* Add model 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_coverage_sbiobert_cased_mli_en

* Update 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en.md

* Update 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Halil Saglamlar <47859156+hsaglamlar@users.noreply.github.com>

* Add model 2023-05-01-bert_token_classifier_ner_jsl_en (#181)

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-04-28-icd10cm_resolver_pipeline_en (#174)

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-28-ner_profiling_biobert_en (#171)

* Add model 2023-04-28-ner_profiling_biobert_en

* Add model 2023-04-28-ner_profiling_clinical_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-05-02-ner_demographic_extended_en (#187)

Co-authored-by: andrei9825 <andrei@johnsnowlabs.com>

* Add model 2023-05-04-classifier_logreg_ade_en (#194)

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-04-ner_profiling_clinical_en (#196)

* Update 2023-05-04-bert_token_classifier_ner_jsl_en.md

Add benchmark

* fixed typos on 2023-05-04-bert_token_classifier_ner_jsl_en.md

* 2023-05-05-ner_clinical_de (#199)

* 2023-05-04-classifierml_ade_en (#197)

* 2023-05-08-summarizer_clinical_key_facts_en (#201)

* Add model 2023-05-08-summarizer_clinical_key_facts_en

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

changed model name

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

Changed description

---------

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* renamed md file

* 2023-05-09-generic_logreg_classifier_ade_en (#202)

* Add model 2023-05-09-generic_logreg_classifier_ade_en

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

corrected the indentations of the Python codes

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

changed the title

* Add model 2023-05-09-generic_svm_classifier_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>
Co-authored-by: gursev.pirge <67619330+gpirge@users.noreply.github.com>

* Add model 2023-05-08-ner_clinical_de (#200)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-05-11-biogpt_chat_jsl_conditions_en (#204)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-05-11-classifier_logreg_ade_en (#209)

* Add model 2023-05-11-classifier_logreg_ade_en

* Add model 2023-05-11-classifierml_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-12-ner_abbreviation_emb_clinical_medium_en (#214)

* Add model 2023-05-12-ner_abbreviation_emb_clinical_medium_en

* Add model 2023-05-12-ner_abbreviation_emb_clinical_large_en

* Update 2023-05-12-ner_abbreviation_emb_clinical_medium_en.md

* Update 2023-05-12-ner_abbreviation_emb_clinical_large_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-11-icd10cm_cause_claim_mapper_en (#210)

* Add model 2023-05-11-icd10cm_cause_claim_mapper_en

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The provided example is updated based on the review. Additional explanation is added for the case where there is no equivalent claim analysis code.

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The output results are changed.

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>
Co-authored-by: Samed K <110497137+SKocer@users.noreply.github.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* Add model 2023-05-13-spellcheck_drug_norvig_en (#220)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-15-ner_anatomy_emb_clinical_medium_en (#225)

* Add model 2023-05-15-ner_anatomy_emb_clinical_medium_en

* Add model 2023-05-15-ner_anatomy_emb_clinical_large_en

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-15-biogpt_pubmed_qa_en (#227)

* Add model 2023-05-15-biogpt_pubmed_qa_en

* Update 2023-05-15-biogpt_pubmed_qa_en.md

* Add model 2023-05-15-flan_t5_base_jsl_qa_en

* Update 2023-05-15-flan_t5_base_jsl_qa_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-05-17-medical_qa_biogpt_en (#234)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-20-explain_clinical_doc_era_en.md

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-28-icd10cm_resolver_pipeline_en.md

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-20-sbiobertresolve_icd10cm_augmented_en (#243)

* Add model 2023-05-20-sbiobertresolve_icd10cm_augmented_en

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-21-ner_ade_emb_clinical_medium_en (#244)

* Add model 2023-05-21-ner_ade_emb_clinical_medium_en

* Add model 2023-05-21-ner_ade_emb_clinical_large_en

* Add model 2023-05-24-ner_cellular_emb_clinical_medium_en

* Add model 2023-05-24-ner_cellular_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-05-23-ner_bacterial_species_emb_clinical_medium_en (#252)

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_medium_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_large_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-19-ner_vop_wip_en (#242)

* Add model 2023-05-19-ner_vop_wip_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_large_en

* Add model 2023-05-19-ner_vop_anatomy_wip_en

* Add model 2023-05-19-ner_vop_clinical_dept_wip_en

* Add model 2023-05-19-ner_vop_demographic_wip_en

* Add model 2023-05-19-ner_vop_problem_reduced_wip_en

* Add model 2023-05-19-ner_vop_problem_wip_en

* Add model 2023-05-19-ner_vop_temporal_wip_en

* Add model 2023-05-19-ner_vop_test_wip_en

* Add model 2023-05-19-ner_vop_treatment_wip_en

* Update 2023-05-19-ner_vop_anatomy_wip_en.md

Fixing wrong special character (").

* Update 2023-05-19-ner_vop_treatment_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_test_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_temporal_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_reduced_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_demographic_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_clinical_dept_wip_en.md

Adding sample text.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changing model name ner_vop_wip_embeddings_clinical_medium to ner_vop_wip_emb_clinical_medium.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changing model name ner_vop_wip_embeddings_clinical_large to ner_vop_wip_emb_clinical_large.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changed s3 link.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changed s3 link.

* Add model 2023-05-24-bert_sequence_classifier_vop_side_effect_en

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: mauro-nievoff <55700369+mauro-nievoff@users.noreply.github.com>

* 2023-05-24-sbiobertresolve_icd10cm_generalised_augmented_en (#256)

* 2023-05-29-summarizer_clinical_jsl_pipeline_en (#282)

* 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar (#283)

* Add model 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar

* Update 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar.md

* update md file name

* Add model 2023-05-30-ner_deid_generic_ar

* fixed typos

* fixed typos

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-29-summarizer_clinical_layman_en (#280)

* Add model 2023-05-29-summarizer_clinical_layman_en

* Update 2023-05-29-summarizer_clinical_layman_en.md

* update model name

* Added English names to the example text

---------

Co-authored-by: dcecchini <dadachini@hotmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-26-icd10cm_billable_hcc_mapper_en (#266)

* Add model 2023-05-26-icd10cm_billable_hcc_mapper_en

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

md file was fixed based on the feedback.

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-16-classifier_logreg_ade_en (#232)

* 2023-05-30-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#299)

* 2023-05-30-icd10cm_mapper_en (#295)

* 2023-05-31-sbiobertresolve_hcc_augmented_en (#304)

* Add model 2023-05-31-sbiobertresolve_hcc_augmented_en

* Update 2023-05-31-sbiobertresolve_hcc_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en (#305)

* Add model 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en

* Add model 2023-05-31-summarizer_radiology_pipeline_en

* Add model 2023-05-31-summarizer_clinical_questions_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Delete 2023-05-31-summarizer_biomedical_pubmed_pipeline_en.md

* Add model 2023-05-31-summarizer_generic_jsl_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_augmented_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-31-sbertresolve_icd10cm_slim_billable_hcc_en (#302)

* 2023-05-31-sbertresolve_icd10cm_augmented_en (#306)

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

* Update 2023-05-31-ner_deid_subentity_pipeline_ar.md

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-06-02-ner_chemicals_emb_clinical_large_en (#327)

* Add model 2023-06-06-ner_deid_generic_pipeline_ar (#351)

* 2023-06-06-ner_vop_en (#350)

* Add model 2023-06-08-ner_demographic_extended_healthcare_en (#359)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-06-summarizer_clinical_laymen_pipeline_en (#352)

* Add model 2023-06-06-summarizer_clinical_laymen_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-07-bert_token_classifier_ner_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-06-11-ner_profiling_biobert_en (#362)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-09-ner_vop_pipeline_en (#361)

* Add model 2023-06-09-ner_vop_pipeline_en

* Add model 2023-06-09-ner_vop_anatomy_pipeline_en

* Add model 2023-06-10-ner_vop_clinical_dept_pipeline_en

* Add model 2023-06-10-ner_vop_demographic_pipeline_en

* Add model 2023-06-10-ner_vop_problem_pipeline_en

* Add model 2023-06-10-ner_vop_problem_reduced_pipeline_en

* Add model 2023-06-10-ner_vop_temporal_pipeline_en

* Add model 2023-06-10-ner_vop_test_pipeline_en

* Add model 2023-06-10-ner_vop_treatment_pipeline_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-06-13-ner_sdoh_en (#370)

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* Add model 2023-06-13-icd10cm_umls_mapping_en (#373)

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#368)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-explain_clinical_doc_carp_en

* Add model 2023-06-13-explain_clinical_doc_era_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-explain_clinical_doc_medication_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-oncology_general_pipeline_en

* Add model 2023-06-13-oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-13-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-13-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_posology_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-13-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-13-ner_clinical_bert_pipeline_ro

* Add model 2023-06-13-ner_clinical_pipeline_ro

* Add model 2023-06-13-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-ner_covid_trials_pipeline_en

* Add model 2023-06-13-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_generic_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_pipeline_ro

* Add model 2023-06-13-ner_living_species_300_pipeline_es

* Add model 2023-06-13-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-13-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_oncology_demographics_pipeline_en

* Add model 2023-06-13-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-13-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-13-ner_oncology_test_pipeline_en

* Add model 2023-06-13-ner_oncology_therapy_pipeline_en

* Add model 2023-06-13-ner_oncology_tnm_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-13-ner_pharmacology_pipeline_es

* Add model 2023-06-13-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-13-ner_deid_generic_pipeline_it

* Add model 2023-06-13-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_it

* Add model 2023-06-13-ner_deid_synthetic_pipeline_en

* Add model 2023-06-13-ner_living_species_bert_pipeline_es

* Add model 2023-06-13-ner_living_species_bert_pipeline_fr

* Add model 2023-06-13-ner_living_species_bert_pipeline_it

* Add model 2023-06-13-ner_living_species_bert_pipeline_pt

* Add model 2023-06-13-ner_living_species_bert_pipeline_ro

* Add model 2023-06-13-ner_living_species_pipeline_ca

* Add model 2023-06-13-ner_living_species_pipeline_en

* Add model 2023-06-13-ner_living_species_pipeline_es

* Add model 2023-06-13-ner_living_species_pipeline_fr

* Add model 2023-06-13-ner_living_species_pipeline_gl

* Add model 2023-06-13-ner_living_species_pipeline_it

* Add model 2023-06-13-ner_living_species_pipeline_pt

* Add model 2023-06-13-ner_living_species_roberta_pipeline_es

* Add model 2023-06-13-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-13-ner_chemd_clinical_pipeline_en

* Add model 2023-06-13-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-13-ner_supplement_clinical_pipeline_en

* Add model 2023-06-13-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-13-ner_diag_proc_pipeline_es

* Add model 2023-06-13-ner_healthcare_pipeline_de

* Add model 2023-06-13-ner_healthcare_slim_pipeline_de

* Add model 2023-06-13-ner_neoplasms_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-13-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-13-ner_living_species_biobert_pipeline_en

* Add model 2023-06-13-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-13-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_ncbi_disease_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#375)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_drug_side_effect_en (#376)

* Add model 2023-06-14-clinical_deidentification_ar (#382)

* 2023-06-13-recognize_entities_posology_en (#378)

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en (#380)

* Add model 2023-06-15-ner_profiling_biobert_en (#397)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#399)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#400)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#401)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-clinical_deidentification_fr (#403)

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-16-ner_pharmacology_pipeline_es

* Add model 2023-06-16-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_it

* Add model 2023-06-16-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_it

* Add model 2023-06-16-ner_deid_synthetic_pipeline_en

* Add model 2023-06-16-ner_living_species_bert_pipeline_es

* Add model 2023-06-16-ner_living_species_bert_pipeline_fr

* Add model 2023-06-16-ner_living_species_bert_pipeline_it

* Add model 2023-06-16-ner_living_species_bert_pipeline_pt

* Add model 2023-06-16-ner_living_species_bert_pipeline_ro

* Add model 2023-06-16-ner_living_species_pipeline_ca

* Add model 2023-06-16-ner_living_species_pipeline_en

* Add model 2023-06-16-ner_living_species_pipeline_es

* Add model 2023-06-16-ner_living_species_pipeline_fr

* Add model 2023-06-16-ner_living_species_pipeline_gl

* Add model 2023-06-16-ner_living_species_pipeline_it

* Add model 2023-06-16-ner_living_species_pipeline_pt

* Add model 2023-06-16-ner_living_species_roberta_pipeline_es

* Add model 2023-06-16-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-16-ner_chemd_clinical_pipeline_en

* Add model 2023-06-16-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-16-ner_supplement_clinical_pipeline_en

* Add model 2023-06-16-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-16-ner_diag_proc_pipeline_es

* Add model 2023-06-16-ner_healthcare_pipeline_de

* Add model 2023-06-16-ner_healthcare_slim_pipeline_de

* Add model 2023-06-16-ner_neoplasms_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-16-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-16-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-16-ner_living_species_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_ar

* Add model 2023-06-16-ner_deid_generic_pipeline_ar

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#406)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-17-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-17-ner_pharmacology_pipeline_es

* Add model 2023-06-17-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-17-ner_deid_generic_pipeline_it

* Add model 2023-06-17-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-17-ner_deid_subentity_pipeline_it

* Add model 2023-06-17-ner_deid_synthetic_pipeline_en

* Add model 2023-06-17-ner_living_species_bert_pipeline_es

* Add model 2023-06-17-ner_living_species_bert_pipeline_fr

* Add model 2023-06-17-ner_living_species_bert_pipeline_pt

* Add model 2023-06-17-ner_living_species_bert_pipeline_ro

* Add model 2023-06-17-ner_living_species_bert_pipeline_it

* Add model 2023-06-17-ner_living_species_pipeline_ca

* Add model 2023-06-17-ner_living_species_pipeline_en

* Add model 2023-06-17-ner_living_species_pipeline_es

* Add model 2023-06-17-ner_living_species_pipeline_fr

* Add model 2023-06-17-ner_living_species_pipeline_gl

* Add model 2023-06-17-ner_living_species_pipeline_it

* Add model 2023-06-17-ner_living_species_pipeline_pt

* Add model 2023-06-17-ner_living_species_roberta_pipeline_es

* Add model 2023-06-17-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-17-ner_chemd_clinical_pipeline_en

* Add model 2023-06-17-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-17-ner_supplement_clinical_pipeline_en

* Add model 2023-06-17-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-17-ner_diag_proc_pipeline_es

* Add model 2023-06-17-ner_healthcare_pipeline_de

* Add model 2023-06-17-ner_healthcare_slim_pipeline_de

* Add model 2023-06-17-ner_neoplasms_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-17-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-17-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-17-ner_deid_generic_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-17-ner_deid_subentity_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-17-ner_living_species_biobert_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-17-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-17-ner_living_species_biobert_pipeline_en

* Add model 2023-06-17-ner_deid_generic_pipeline_ar

* Add model 2023-06-17-ner_deid_subentity_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_es

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-17-ner_profiling_biobert_en (#408)

* Add model 2023-06-17-ner_profiling_biobert_en

* Add model 2023-06-17-clinical_deidentification_en

* Add model 2023-06-17-explain_clinical_doc_carp_en

* Add model 2023-06-17-explain_clinical_doc_era_en

* Add model 2023-06-17-recognize_entities_posology_en

* Add model 2023-06-17-snomed_icd10cm_mapping_en

* Add model 2023-06-17-clinical_deidentification_glove_en

* Add model 2023-06-17-icd10cm_umls_mapping_en

* Add model 2023-06-17-icd10_icd9_mapping_en

* Add model 2023-06-17-mesh_umls_mapping_en

* Add model 2023-06-17-clinical_deidentification_es

* Add model 2023-06-17-rxnorm_mesh_mapping_en

* Add model 2023-06-17-clinical_deidentification_augmented_es

* Add model 2023-06-17-clinical_deidentification_fr

* Add model 2023-06-17-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-17-explain_clinical_doc_ade_en

* Add model 2023-06-17-clinical_deidentification_de

* Add model 2023-06-17-bert_token_classifier_ner_cellular_pipeline_en

* Add mode…
vkocaman added a commit that referenced this pull request Aug 18, 2023
@Cabir40 @jsl-models
@Ahmetemintek @Damla-Gurbaz @vkocaman @mauro-nievoff @hsaglamlar @SKocer @Meryem1425 @gokhanturer @HashamUlHaq @andrei9825 @gpirge @muhammetsnts @mellahysf @dcecchini @ahmedlone127 @C-K-Loan @bunyamin-polat @ArshaanNazir @RakshitKhajuria @Prikshit7766 @ahmet-mesut
Models hub internal (#534)
d0789bf 
* 2023-03-29-icd10cm_resolver_pipeline_en (#44)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-03-29-oncology_general_pipeline_en (#46)

* Add model 2023-03-29-oncology_general_pipeline_en

* Add model 2023-03-29-oncology_diagnosis_pipeline_en

* Add model 2023-03-29-oncology_biomarker_pipeline_en

* Add model 2023-03-29-icd10_icd9_mapping_en

* Add model 2023-03-29-icd10cm_snomed_mapping_en

* Add model 2023-03-29-icd10cm_umls_mapping_en

* Add model 2023-03-29-icd9_resolver_pipeline_en

* Add model 2023-03-29-icdo_snomed_mapping_en

* Add model 2023-03-29-mesh_umls_mapping_en

* Add model 2023-03-29-rxnorm_ndc_mapping_en

* Add model 2023-03-29-rxnorm_umls_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icdo_mapping_en

* Add model 2023-03-29-oncology_therapy_pipeline_en

* Add model 2023-03-29-snomed_umls_mapping_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-29-icd10cm_resolver_pipeline_en (#45)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-umls_drug_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-03-30-text_generator_biomedical_biogpt_en (#48)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-30-summarizer_generic_jsl_en (#49)

* Add model 2023-03-30-summarizer_generic_jsl_en

* Update 2023-03-30-summarizer_generic_jsl_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-03-30-summarizer_clinical_jsl_augmented_en (#51)

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Update 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en (#58)

* Add model 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Veysel Kocaman <vkocaman@gmail.com>

* 2023-03-30-ner_vop_wip_en (#52)

* Add model 2023-03-30-ner_vop_wip_en

* Update 2023-03-30-ner_vop_wip_en.md

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-03-30-umls_clinical_findings_resolver_pipeline_en (#47)

* Add model 2023-03-30-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-03-30-cvx_resolver_pipeline_en

* Add model 2023-03-30-umls_disease_syndrome_resolver_pipeline_en

* Add model 2023-03-30-umls_major_concepts_resolver_pipeline_en

* Add model 2023-03-30-umls_drug_substance_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_transform_pipeline_en

* Add model 2023-03-31-spellcheck_clinical_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-03-ner_oncology_limited_80p_for_benchmarks_en (#61)

* 2023-04-03-text_generator_biomedical_biogpt_base_en (#60)

* Delete 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-04-03-text_generator_generic_flan_base_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Add model 2023-04-04-text_generator_generic_flan_t5_large_en (#64)

* 2023-04-07-embeddings_clinical_medium_en (#75)

* Add model 2023-04-07-embeddings_clinical_medium_en

* Update 2023-04-07-embeddings_clinical_medium_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-04-07-embeddings_clinical_large_en (#79)

* 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en (#81)

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en

* Add model 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en

* Add model 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en

* added missing md files

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en

* Delete 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-04-10-medication_resolver_pipeline_en (#83)

* Add model 2023-04-10-medication_resolver_pipeline_en

* Add model 2023-04-11-medication_resolver_transform_pipeline_en

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>

* 2023-04-11-umls_clinical_findings_resolver_pipeline_en (#89)

* Add model 2023-04-11-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-04-11-umls_drug_substance_resolver_pipeline_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_vop_emb_clinical_large_wip_en (#100)

* Add model 2023-04-12-ner_vop_emb_clinical_large_wip_en

* Add model 2023-04-12-ner_vop_emb_clinical_medium_wip_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-04-12-biogpt_chat_jsl_en (#103)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_oncology_emb_clinical_large_en (#101)

* Add model 2023-04-12-ner_oncology_emb_clinical_large_en

* Add model 2023-04-12-ner_oncology_emb_clinical_medium_en

---------

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-12-ner_posology_emb_clinical_large_en (#99)

* Add model 2023-04-12-ner_posology_emb_clinical_large_en

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed the given sample text

* Add model 2023-04-12-ner_posology_emb_clinical_medium_en

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Corrected thr code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_large_en

* Update 2023-04-12-ner_deid_large_emb_clinical_large_en.md

Corrected the code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_medium_en

* Update 2023-04-12-ner_deid_large_emb_clinical_medium_en.md

corrected the python code block view

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Fixed scala code

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed scala code

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-04-12-ner_jsl_emb_clinical_medium_en (#98)

* Add model 2023-04-12-ner_jsl_emb_clinical_medium_en

* Add model 2023-04-12-ner_jsl_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en (#96)

* Add model 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en

* Add model 2023-04-12-ner_sdoh_emb_clinical_large_wip_en

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* 2023-04-13-ndc_hcpcs_mapper_en (#113)

* Add model 2023-04-13-ndc_hcpcs_mapper_en

* Add model 2023-04-13-hcpcs_ndc_mapper_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-13-medication_resolver_pipeline_en (#110)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-04-17-ner_sdoh_emb_clinical_large_wip_en (#126)

* Add model 2023-04-18-biogpt_chat_jsl_conversational_en (#130)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-04-20-explain_clinical_doc_medication_en (#140)

* Add model 2023-04-20-explain_clinical_doc_medication_en

* Add model 2023-04-20-explain_clinical_doc_radiology_en

* Add model 2023-04-20-explain_clinical_doc_ade_en

* Add model 2023-04-20-explain_clinical_doc_era_en

* Add model 2023-04-20-explain_clinical_doc_carp_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-23-summarizer_jsl_radiology_en (#145)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-20-ner_vop_anatomy_wip_en (#139)

* 2023-04-26-ner_profiling_biobert_en (#151)

* 2023-04-27-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#168)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en (#170)

* Add model 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_coverage_sbiobert_cased_mli_en

* Update 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en.md

* Update 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Halil Saglamlar <47859156+hsaglamlar@users.noreply.github.com>

* Add model 2023-05-01-bert_token_classifier_ner_jsl_en (#181)

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-04-28-icd10cm_resolver_pipeline_en (#174)

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-28-ner_profiling_biobert_en (#171)

* Add model 2023-04-28-ner_profiling_biobert_en

* Add model 2023-04-28-ner_profiling_clinical_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-05-02-ner_demographic_extended_en (#187)

Co-authored-by: andrei9825 <andrei@johnsnowlabs.com>

* Add model 2023-05-04-classifier_logreg_ade_en (#194)

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-04-ner_profiling_clinical_en (#196)

* Update 2023-05-04-bert_token_classifier_ner_jsl_en.md

Add benchmark

* fixed typos on 2023-05-04-bert_token_classifier_ner_jsl_en.md

* 2023-05-05-ner_clinical_de (#199)

* 2023-05-04-classifierml_ade_en (#197)

* 2023-05-08-summarizer_clinical_key_facts_en (#201)

* Add model 2023-05-08-summarizer_clinical_key_facts_en

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

changed model name

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

Changed description

---------

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* renamed md file

* 2023-05-09-generic_logreg_classifier_ade_en (#202)

* Add model 2023-05-09-generic_logreg_classifier_ade_en

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

corrected the indentations of the Python codes

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

changed the title

* Add model 2023-05-09-generic_svm_classifier_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>
Co-authored-by: gursev.pirge <67619330+gpirge@users.noreply.github.com>

* Add model 2023-05-08-ner_clinical_de (#200)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-05-11-biogpt_chat_jsl_conditions_en (#204)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-05-11-classifier_logreg_ade_en (#209)

* Add model 2023-05-11-classifier_logreg_ade_en

* Add model 2023-05-11-classifierml_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-12-ner_abbreviation_emb_clinical_medium_en (#214)

* Add model 2023-05-12-ner_abbreviation_emb_clinical_medium_en

* Add model 2023-05-12-ner_abbreviation_emb_clinical_large_en

* Update 2023-05-12-ner_abbreviation_emb_clinical_medium_en.md

* Update 2023-05-12-ner_abbreviation_emb_clinical_large_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-11-icd10cm_cause_claim_mapper_en (#210)

* Add model 2023-05-11-icd10cm_cause_claim_mapper_en

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The provided example is updated based on the review. Additional explanation is added for the case where there is no equivalent claim analysis code.

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The output results are changed.

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>
Co-authored-by: Samed K <110497137+SKocer@users.noreply.github.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* Add model 2023-05-13-spellcheck_drug_norvig_en (#220)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-15-ner_anatomy_emb_clinical_medium_en (#225)

* Add model 2023-05-15-ner_anatomy_emb_clinical_medium_en

* Add model 2023-05-15-ner_anatomy_emb_clinical_large_en

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-15-biogpt_pubmed_qa_en (#227)

* Add model 2023-05-15-biogpt_pubmed_qa_en

* Update 2023-05-15-biogpt_pubmed_qa_en.md

* Add model 2023-05-15-flan_t5_base_jsl_qa_en

* Update 2023-05-15-flan_t5_base_jsl_qa_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-05-17-medical_qa_biogpt_en (#234)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-20-explain_clinical_doc_era_en.md

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-28-icd10cm_resolver_pipeline_en.md

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-20-sbiobertresolve_icd10cm_augmented_en (#243)

* Add model 2023-05-20-sbiobertresolve_icd10cm_augmented_en

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-21-ner_ade_emb_clinical_medium_en (#244)

* Add model 2023-05-21-ner_ade_emb_clinical_medium_en

* Add model 2023-05-21-ner_ade_emb_clinical_large_en

* Add model 2023-05-24-ner_cellular_emb_clinical_medium_en

* Add model 2023-05-24-ner_cellular_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-05-23-ner_bacterial_species_emb_clinical_medium_en (#252)

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_medium_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_large_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-19-ner_vop_wip_en (#242)

* Add model 2023-05-19-ner_vop_wip_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_large_en

* Add model 2023-05-19-ner_vop_anatomy_wip_en

* Add model 2023-05-19-ner_vop_clinical_dept_wip_en

* Add model 2023-05-19-ner_vop_demographic_wip_en

* Add model 2023-05-19-ner_vop_problem_reduced_wip_en

* Add model 2023-05-19-ner_vop_problem_wip_en

* Add model 2023-05-19-ner_vop_temporal_wip_en

* Add model 2023-05-19-ner_vop_test_wip_en

* Add model 2023-05-19-ner_vop_treatment_wip_en

* Update 2023-05-19-ner_vop_anatomy_wip_en.md

Fixing wrong special character (").

* Update 2023-05-19-ner_vop_treatment_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_test_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_temporal_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_reduced_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_demographic_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_clinical_dept_wip_en.md

Adding sample text.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changing model name ner_vop_wip_embeddings_clinical_medium to ner_vop_wip_emb_clinical_medium.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changing model name ner_vop_wip_embeddings_clinical_large to ner_vop_wip_emb_clinical_large.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changed s3 link.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changed s3 link.

* Add model 2023-05-24-bert_sequence_classifier_vop_side_effect_en

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: mauro-nievoff <55700369+mauro-nievoff@users.noreply.github.com>

* 2023-05-24-sbiobertresolve_icd10cm_generalised_augmented_en (#256)

* 2023-05-29-summarizer_clinical_jsl_pipeline_en (#282)

* 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar (#283)

* Add model 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar

* Update 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar.md

* update md file name

* Add model 2023-05-30-ner_deid_generic_ar

* fixed typos

* fixed typos

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-29-summarizer_clinical_layman_en (#280)

* Add model 2023-05-29-summarizer_clinical_layman_en

* Update 2023-05-29-summarizer_clinical_layman_en.md

* update model name

* Added English names to the example text

---------

Co-authored-by: dcecchini <dadachini@hotmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-26-icd10cm_billable_hcc_mapper_en (#266)

* Add model 2023-05-26-icd10cm_billable_hcc_mapper_en

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

md file was fixed based on the feedback.

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-16-classifier_logreg_ade_en (#232)

* 2023-05-30-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#299)

* 2023-05-30-icd10cm_mapper_en (#295)

* 2023-05-31-sbiobertresolve_hcc_augmented_en (#304)

* Add model 2023-05-31-sbiobertresolve_hcc_augmented_en

* Update 2023-05-31-sbiobertresolve_hcc_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en (#305)

* Add model 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en

* Add model 2023-05-31-summarizer_radiology_pipeline_en

* Add model 2023-05-31-summarizer_clinical_questions_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Delete 2023-05-31-summarizer_biomedical_pubmed_pipeline_en.md

* Add model 2023-05-31-summarizer_generic_jsl_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_augmented_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-31-sbertresolve_icd10cm_slim_billable_hcc_en (#302)

* 2023-05-31-sbertresolve_icd10cm_augmented_en (#306)

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

* Update 2023-05-31-ner_deid_subentity_pipeline_ar.md

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-06-02-ner_chemicals_emb_clinical_large_en (#327)

* Add model 2023-06-06-ner_deid_generic_pipeline_ar (#351)

* 2023-06-06-ner_vop_en (#350)

* Add model 2023-06-08-ner_demographic_extended_healthcare_en (#359)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-06-summarizer_clinical_laymen_pipeline_en (#352)

* Add model 2023-06-06-summarizer_clinical_laymen_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-07-bert_token_classifier_ner_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-06-11-ner_profiling_biobert_en (#362)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-09-ner_vop_pipeline_en (#361)

* Add model 2023-06-09-ner_vop_pipeline_en

* Add model 2023-06-09-ner_vop_anatomy_pipeline_en

* Add model 2023-06-10-ner_vop_clinical_dept_pipeline_en

* Add model 2023-06-10-ner_vop_demographic_pipeline_en

* Add model 2023-06-10-ner_vop_problem_pipeline_en

* Add model 2023-06-10-ner_vop_problem_reduced_pipeline_en

* Add model 2023-06-10-ner_vop_temporal_pipeline_en

* Add model 2023-06-10-ner_vop_test_pipeline_en

* Add model 2023-06-10-ner_vop_treatment_pipeline_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-06-13-ner_sdoh_en (#370)

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* Add model 2023-06-13-icd10cm_umls_mapping_en (#373)

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#368)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-explain_clinical_doc_carp_en

* Add model 2023-06-13-explain_clinical_doc_era_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-explain_clinical_doc_medication_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-oncology_general_pipeline_en

* Add model 2023-06-13-oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-13-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-13-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_posology_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-13-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-13-ner_clinical_bert_pipeline_ro

* Add model 2023-06-13-ner_clinical_pipeline_ro

* Add model 2023-06-13-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-ner_covid_trials_pipeline_en

* Add model 2023-06-13-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_generic_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_pipeline_ro

* Add model 2023-06-13-ner_living_species_300_pipeline_es

* Add model 2023-06-13-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-13-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_oncology_demographics_pipeline_en

* Add model 2023-06-13-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-13-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-13-ner_oncology_test_pipeline_en

* Add model 2023-06-13-ner_oncology_therapy_pipeline_en

* Add model 2023-06-13-ner_oncology_tnm_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-13-ner_pharmacology_pipeline_es

* Add model 2023-06-13-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-13-ner_deid_generic_pipeline_it

* Add model 2023-06-13-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_it

* Add model 2023-06-13-ner_deid_synthetic_pipeline_en

* Add model 2023-06-13-ner_living_species_bert_pipeline_es

* Add model 2023-06-13-ner_living_species_bert_pipeline_fr

* Add model 2023-06-13-ner_living_species_bert_pipeline_it

* Add model 2023-06-13-ner_living_species_bert_pipeline_pt

* Add model 2023-06-13-ner_living_species_bert_pipeline_ro

* Add model 2023-06-13-ner_living_species_pipeline_ca

* Add model 2023-06-13-ner_living_species_pipeline_en

* Add model 2023-06-13-ner_living_species_pipeline_es

* Add model 2023-06-13-ner_living_species_pipeline_fr

* Add model 2023-06-13-ner_living_species_pipeline_gl

* Add model 2023-06-13-ner_living_species_pipeline_it

* Add model 2023-06-13-ner_living_species_pipeline_pt

* Add model 2023-06-13-ner_living_species_roberta_pipeline_es

* Add model 2023-06-13-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-13-ner_chemd_clinical_pipeline_en

* Add model 2023-06-13-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-13-ner_supplement_clinical_pipeline_en

* Add model 2023-06-13-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-13-ner_diag_proc_pipeline_es

* Add model 2023-06-13-ner_healthcare_pipeline_de

* Add model 2023-06-13-ner_healthcare_slim_pipeline_de

* Add model 2023-06-13-ner_neoplasms_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-13-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-13-ner_living_species_biobert_pipeline_en

* Add model 2023-06-13-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-13-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_ncbi_disease_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#375)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_drug_side_effect_en (#376)

* Add model 2023-06-14-clinical_deidentification_ar (#382)

* 2023-06-13-recognize_entities_posology_en (#378)

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en (#380)

* Add model 2023-06-15-ner_profiling_biobert_en (#397)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#399)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#400)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#401)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-clinical_deidentification_fr (#403)

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-16-ner_pharmacology_pipeline_es

* Add model 2023-06-16-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_it

* Add model 2023-06-16-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_it

* Add model 2023-06-16-ner_deid_synthetic_pipeline_en

* Add model 2023-06-16-ner_living_species_bert_pipeline_es

* Add model 2023-06-16-ner_living_species_bert_pipeline_fr

* Add model 2023-06-16-ner_living_species_bert_pipeline_it

* Add model 2023-06-16-ner_living_species_bert_pipeline_pt

* Add model 2023-06-16-ner_living_species_bert_pipeline_ro

* Add model 2023-06-16-ner_living_species_pipeline_ca

* Add model 2023-06-16-ner_living_species_pipeline_en

* Add model 2023-06-16-ner_living_species_pipeline_es

* Add model 2023-06-16-ner_living_species_pipeline_fr

* Add model 2023-06-16-ner_living_species_pipeline_gl

* Add model 2023-06-16-ner_living_species_pipeline_it

* Add model 2023-06-16-ner_living_species_pipeline_pt

* Add model 2023-06-16-ner_living_species_roberta_pipeline_es

* Add model 2023-06-16-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-16-ner_chemd_clinical_pipeline_en

* Add model 2023-06-16-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-16-ner_supplement_clinical_pipeline_en

* Add model 2023-06-16-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-16-ner_diag_proc_pipeline_es

* Add model 2023-06-16-ner_healthcare_pipeline_de

* Add model 2023-06-16-ner_healthcare_slim_pipeline_de

* Add model 2023-06-16-ner_neoplasms_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-16-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-16-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-16-ner_living_species_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_ar

* Add model 2023-06-16-ner_deid_generic_pipeline_ar

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#406)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-17-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-17-ner_pharmacology_pipeline_es

* Add model 2023-06-17-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-17-ner_deid_generic_pipeline_it

* Add model 2023-06-17-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-17-ner_deid_subentity_pipeline_it

* Add model 2023-06-17-ner_deid_synthetic_pipeline_en

* Add model 2023-06-17-ner_living_species_bert_pipeline_es

* Add model 2023-06-17-ner_living_species_bert_pipeline_fr

* Add model 2023-06-17-ner_living_species_bert_pipeline_pt

* Add model 2023-06-17-ner_living_species_bert_pipeline_ro

* Add model 2023-06-17-ner_living_species_bert_pipeline_it

* Add model 2023-06-17-ner_living_species_pipeline_ca

* Add model 2023-06-17-ner_living_species_pipeline_en

* Add model 2023-06-17-ner_living_species_pipeline_es

* Add model 2023-06-17-ner_living_species_pipeline_fr

* Add model 2023-06-17-ner_living_species_pipeline_gl

* Add model 2023-06-17-ner_living_species_pipeline_it

* Add model 2023-06-17-ner_living_species_pipeline_pt

* Add model 2023-06-17-ner_living_species_roberta_pipeline_es

* Add model 2023-06-17-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-17-ner_chemd_clinical_pipeline_en

* Add model 2023-06-17-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-17-ner_supplement_clinical_pipeline_en

* Add model 2023-06-17-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-17-ner_diag_proc_pipeline_es

* Add model 2023-06-17-ner_healthcare_pipeline_de

* Add model 2023-06-17-ner_healthcare_slim_pipeline_de

* Add model 2023-06-17-ner_neoplasms_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-17-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-17-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-17-ner_deid_generic_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-17-ner_deid_subentity_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-17-ner_living_species_biobert_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-17-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-17-ner_living_species_biobert_pipeline_en

* Add model 2023-06-17-ner_deid_generic_pipeline_ar

* Add model 2023-06-17-ner_deid_subentity_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_es

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-17-ner_profiling_biobert_en (#408)

* Add model 2023-06-17-ner_profiling_biobert_en

* Add model 2023-06-17-clinical_deidentification_en

* Add model 2023-06-17-explain_clinical_doc_carp_en

* Add model 2023-06-17-explain_clinical_doc_era_en

* Add model 2023-06-17-recognize_entities_posology_en

* Add model 2023-06-17-snomed_icd10cm_mapping_en

* Add model 2023-06-17-clinical_deidentification_glove_en

* Add model 2023-06-17-icd10cm_umls_mapping_en

* Add model 2023-06-17-icd10_icd9_mapping_en

* Add model 2023-06-17-mesh_umls_mapping_en

* Add model 2023-06-17-clinical_deidentification_es

* Add model 2023-06-17-rxnorm_mesh_mapping_en

* Add model 2023-06-17-clinical_deidentification_augmented_es

* Add model 2023-06-17-clinical_deidentification_fr

* Add model 2023-06-17-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-17-explain_clinical_doc_ade_en

* Add model 2023-06-17-clinical_deidentification_de

* Add model 2023-06-17-bert_token_classifier_ner_cellular_pipeline_en

* Add mode…
@Cabir40 Cabir40 deleted the 2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en_dMfBmbRIcS7tBNuRgSekADDs branch September 19, 2023 11:52
vkocaman added a commit that referenced this pull request Oct 17, 2023
@Cabir40 @jsl-models
@Ahmetemintek @Damla-Gurbaz @vkocaman @mauro-nievoff @hsaglamlar @SKocer @Meryem1425 @gokhanturer @HashamUlHaq @andrei9825 @gpirge @muhammetsnts @mellahysf @dcecchini @ahmedlone127 @C-K-Loan @bunyamin-polat @ArshaanNazir @RakshitKhajuria @Prikshit7766 @ahmet-mesut @aymanechilah @sonurdogan @akrztrk
Models hub internal (#706)
6239070 
* 2023-03-29-icd10cm_resolver_pipeline_en (#44)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-03-29-oncology_general_pipeline_en (#46)

* Add model 2023-03-29-oncology_general_pipeline_en

* Add model 2023-03-29-oncology_diagnosis_pipeline_en

* Add model 2023-03-29-oncology_biomarker_pipeline_en

* Add model 2023-03-29-icd10_icd9_mapping_en

* Add model 2023-03-29-icd10cm_snomed_mapping_en

* Add model 2023-03-29-icd10cm_umls_mapping_en

* Add model 2023-03-29-icd9_resolver_pipeline_en

* Add model 2023-03-29-icdo_snomed_mapping_en

* Add model 2023-03-29-mesh_umls_mapping_en

* Add model 2023-03-29-rxnorm_ndc_mapping_en

* Add model 2023-03-29-rxnorm_umls_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icdo_mapping_en

* Add model 2023-03-29-oncology_therapy_pipeline_en

* Add model 2023-03-29-snomed_umls_mapping_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-29-icd10cm_resolver_pipeline_en (#45)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-umls_drug_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-03-30-text_generator_biomedical_biogpt_en (#48)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-30-summarizer_generic_jsl_en (#49)

* Add model 2023-03-30-summarizer_generic_jsl_en

* Update 2023-03-30-summarizer_generic_jsl_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-03-30-summarizer_clinical_jsl_augmented_en (#51)

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Update 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en (#58)

* Add model 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Veysel Kocaman <vkocaman@gmail.com>

* 2023-03-30-ner_vop_wip_en (#52)

* Add model 2023-03-30-ner_vop_wip_en

* Update 2023-03-30-ner_vop_wip_en.md

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-03-30-umls_clinical_findings_resolver_pipeline_en (#47)

* Add model 2023-03-30-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-03-30-cvx_resolver_pipeline_en

* Add model 2023-03-30-umls_disease_syndrome_resolver_pipeline_en

* Add model 2023-03-30-umls_major_concepts_resolver_pipeline_en

* Add model 2023-03-30-umls_drug_substance_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_transform_pipeline_en

* Add model 2023-03-31-spellcheck_clinical_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-03-ner_oncology_limited_80p_for_benchmarks_en (#61)

* 2023-04-03-text_generator_biomedical_biogpt_base_en (#60)

* Delete 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-04-03-text_generator_generic_flan_base_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Add model 2023-04-04-text_generator_generic_flan_t5_large_en (#64)

* 2023-04-07-embeddings_clinical_medium_en (#75)

* Add model 2023-04-07-embeddings_clinical_medium_en

* Update 2023-04-07-embeddings_clinical_medium_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-04-07-embeddings_clinical_large_en (#79)

* 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en (#81)

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en

* Add model 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en

* Add model 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en

* added missing md files

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en

* Delete 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-04-10-medication_resolver_pipeline_en (#83)

* Add model 2023-04-10-medication_resolver_pipeline_en

* Add model 2023-04-11-medication_resolver_transform_pipeline_en

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>

* 2023-04-11-umls_clinical_findings_resolver_pipeline_en (#89)

* Add model 2023-04-11-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-04-11-umls_drug_substance_resolver_pipeline_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_vop_emb_clinical_large_wip_en (#100)

* Add model 2023-04-12-ner_vop_emb_clinical_large_wip_en

* Add model 2023-04-12-ner_vop_emb_clinical_medium_wip_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-04-12-biogpt_chat_jsl_en (#103)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_oncology_emb_clinical_large_en (#101)

* Add model 2023-04-12-ner_oncology_emb_clinical_large_en

* Add model 2023-04-12-ner_oncology_emb_clinical_medium_en

---------

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-12-ner_posology_emb_clinical_large_en (#99)

* Add model 2023-04-12-ner_posology_emb_clinical_large_en

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed the given sample text

* Add model 2023-04-12-ner_posology_emb_clinical_medium_en

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Corrected thr code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_large_en

* Update 2023-04-12-ner_deid_large_emb_clinical_large_en.md

Corrected the code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_medium_en

* Update 2023-04-12-ner_deid_large_emb_clinical_medium_en.md

corrected the python code block view

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Fixed scala code

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed scala code

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-04-12-ner_jsl_emb_clinical_medium_en (#98)

* Add model 2023-04-12-ner_jsl_emb_clinical_medium_en

* Add model 2023-04-12-ner_jsl_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en (#96)

* Add model 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en

* Add model 2023-04-12-ner_sdoh_emb_clinical_large_wip_en

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* 2023-04-13-ndc_hcpcs_mapper_en (#113)

* Add model 2023-04-13-ndc_hcpcs_mapper_en

* Add model 2023-04-13-hcpcs_ndc_mapper_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-13-medication_resolver_pipeline_en (#110)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-04-17-ner_sdoh_emb_clinical_large_wip_en (#126)

* Add model 2023-04-18-biogpt_chat_jsl_conversational_en (#130)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-04-20-explain_clinical_doc_medication_en (#140)

* Add model 2023-04-20-explain_clinical_doc_medication_en

* Add model 2023-04-20-explain_clinical_doc_radiology_en

* Add model 2023-04-20-explain_clinical_doc_ade_en

* Add model 2023-04-20-explain_clinical_doc_era_en

* Add model 2023-04-20-explain_clinical_doc_carp_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-23-summarizer_jsl_radiology_en (#145)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-20-ner_vop_anatomy_wip_en (#139)

* 2023-04-26-ner_profiling_biobert_en (#151)

* 2023-04-27-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#168)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en (#170)

* Add model 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_coverage_sbiobert_cased_mli_en

* Update 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en.md

* Update 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Halil Saglamlar <47859156+hsaglamlar@users.noreply.github.com>

* Add model 2023-05-01-bert_token_classifier_ner_jsl_en (#181)

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-04-28-icd10cm_resolver_pipeline_en (#174)

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-28-ner_profiling_biobert_en (#171)

* Add model 2023-04-28-ner_profiling_biobert_en

* Add model 2023-04-28-ner_profiling_clinical_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-05-02-ner_demographic_extended_en (#187)

Co-authored-by: andrei9825 <andrei@johnsnowlabs.com>

* Add model 2023-05-04-classifier_logreg_ade_en (#194)

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-04-ner_profiling_clinical_en (#196)

* Update 2023-05-04-bert_token_classifier_ner_jsl_en.md

Add benchmark

* fixed typos on 2023-05-04-bert_token_classifier_ner_jsl_en.md

* 2023-05-05-ner_clinical_de (#199)

* 2023-05-04-classifierml_ade_en (#197)

* 2023-05-08-summarizer_clinical_key_facts_en (#201)

* Add model 2023-05-08-summarizer_clinical_key_facts_en

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

changed model name

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

Changed description

---------

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* renamed md file

* 2023-05-09-generic_logreg_classifier_ade_en (#202)

* Add model 2023-05-09-generic_logreg_classifier_ade_en

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

corrected the indentations of the Python codes

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

changed the title

* Add model 2023-05-09-generic_svm_classifier_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>
Co-authored-by: gursev.pirge <67619330+gpirge@users.noreply.github.com>

* Add model 2023-05-08-ner_clinical_de (#200)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-05-11-biogpt_chat_jsl_conditions_en (#204)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-05-11-classifier_logreg_ade_en (#209)

* Add model 2023-05-11-classifier_logreg_ade_en

* Add model 2023-05-11-classifierml_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-12-ner_abbreviation_emb_clinical_medium_en (#214)

* Add model 2023-05-12-ner_abbreviation_emb_clinical_medium_en

* Add model 2023-05-12-ner_abbreviation_emb_clinical_large_en

* Update 2023-05-12-ner_abbreviation_emb_clinical_medium_en.md

* Update 2023-05-12-ner_abbreviation_emb_clinical_large_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-11-icd10cm_cause_claim_mapper_en (#210)

* Add model 2023-05-11-icd10cm_cause_claim_mapper_en

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The provided example is updated based on the review. Additional explanation is added for the case where there is no equivalent claim analysis code.

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The output results are changed.

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>
Co-authored-by: Samed K <110497137+SKocer@users.noreply.github.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* Add model 2023-05-13-spellcheck_drug_norvig_en (#220)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-15-ner_anatomy_emb_clinical_medium_en (#225)

* Add model 2023-05-15-ner_anatomy_emb_clinical_medium_en

* Add model 2023-05-15-ner_anatomy_emb_clinical_large_en

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-15-biogpt_pubmed_qa_en (#227)

* Add model 2023-05-15-biogpt_pubmed_qa_en

* Update 2023-05-15-biogpt_pubmed_qa_en.md

* Add model 2023-05-15-flan_t5_base_jsl_qa_en

* Update 2023-05-15-flan_t5_base_jsl_qa_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-05-17-medical_qa_biogpt_en (#234)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-20-explain_clinical_doc_era_en.md

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-28-icd10cm_resolver_pipeline_en.md

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-20-sbiobertresolve_icd10cm_augmented_en (#243)

* Add model 2023-05-20-sbiobertresolve_icd10cm_augmented_en

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-21-ner_ade_emb_clinical_medium_en (#244)

* Add model 2023-05-21-ner_ade_emb_clinical_medium_en

* Add model 2023-05-21-ner_ade_emb_clinical_large_en

* Add model 2023-05-24-ner_cellular_emb_clinical_medium_en

* Add model 2023-05-24-ner_cellular_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-05-23-ner_bacterial_species_emb_clinical_medium_en (#252)

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_medium_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_large_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-19-ner_vop_wip_en (#242)

* Add model 2023-05-19-ner_vop_wip_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_large_en

* Add model 2023-05-19-ner_vop_anatomy_wip_en

* Add model 2023-05-19-ner_vop_clinical_dept_wip_en

* Add model 2023-05-19-ner_vop_demographic_wip_en

* Add model 2023-05-19-ner_vop_problem_reduced_wip_en

* Add model 2023-05-19-ner_vop_problem_wip_en

* Add model 2023-05-19-ner_vop_temporal_wip_en

* Add model 2023-05-19-ner_vop_test_wip_en

* Add model 2023-05-19-ner_vop_treatment_wip_en

* Update 2023-05-19-ner_vop_anatomy_wip_en.md

Fixing wrong special character (").

* Update 2023-05-19-ner_vop_treatment_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_test_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_temporal_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_reduced_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_demographic_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_clinical_dept_wip_en.md

Adding sample text.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changing model name ner_vop_wip_embeddings_clinical_medium to ner_vop_wip_emb_clinical_medium.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changing model name ner_vop_wip_embeddings_clinical_large to ner_vop_wip_emb_clinical_large.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changed s3 link.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changed s3 link.

* Add model 2023-05-24-bert_sequence_classifier_vop_side_effect_en

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: mauro-nievoff <55700369+mauro-nievoff@users.noreply.github.com>

* 2023-05-24-sbiobertresolve_icd10cm_generalised_augmented_en (#256)

* 2023-05-29-summarizer_clinical_jsl_pipeline_en (#282)

* 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar (#283)

* Add model 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar

* Update 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar.md

* update md file name

* Add model 2023-05-30-ner_deid_generic_ar

* fixed typos

* fixed typos

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-29-summarizer_clinical_layman_en (#280)

* Add model 2023-05-29-summarizer_clinical_layman_en

* Update 2023-05-29-summarizer_clinical_layman_en.md

* update model name

* Added English names to the example text

---------

Co-authored-by: dcecchini <dadachini@hotmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-26-icd10cm_billable_hcc_mapper_en (#266)

* Add model 2023-05-26-icd10cm_billable_hcc_mapper_en

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

md file was fixed based on the feedback.

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-16-classifier_logreg_ade_en (#232)

* 2023-05-30-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#299)

* 2023-05-30-icd10cm_mapper_en (#295)

* 2023-05-31-sbiobertresolve_hcc_augmented_en (#304)

* Add model 2023-05-31-sbiobertresolve_hcc_augmented_en

* Update 2023-05-31-sbiobertresolve_hcc_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en (#305)

* Add model 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en

* Add model 2023-05-31-summarizer_radiology_pipeline_en

* Add model 2023-05-31-summarizer_clinical_questions_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Delete 2023-05-31-summarizer_biomedical_pubmed_pipeline_en.md

* Add model 2023-05-31-summarizer_generic_jsl_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_augmented_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-31-sbertresolve_icd10cm_slim_billable_hcc_en (#302)

* 2023-05-31-sbertresolve_icd10cm_augmented_en (#306)

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

* Update 2023-05-31-ner_deid_subentity_pipeline_ar.md

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-06-02-ner_chemicals_emb_clinical_large_en (#327)

* Add model 2023-06-06-ner_deid_generic_pipeline_ar (#351)

* 2023-06-06-ner_vop_en (#350)

* Add model 2023-06-08-ner_demographic_extended_healthcare_en (#359)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-06-summarizer_clinical_laymen_pipeline_en (#352)

* Add model 2023-06-06-summarizer_clinical_laymen_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-07-bert_token_classifier_ner_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-06-11-ner_profiling_biobert_en (#362)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-09-ner_vop_pipeline_en (#361)

* Add model 2023-06-09-ner_vop_pipeline_en

* Add model 2023-06-09-ner_vop_anatomy_pipeline_en

* Add model 2023-06-10-ner_vop_clinical_dept_pipeline_en

* Add model 2023-06-10-ner_vop_demographic_pipeline_en

* Add model 2023-06-10-ner_vop_problem_pipeline_en

* Add model 2023-06-10-ner_vop_problem_reduced_pipeline_en

* Add model 2023-06-10-ner_vop_temporal_pipeline_en

* Add model 2023-06-10-ner_vop_test_pipeline_en

* Add model 2023-06-10-ner_vop_treatment_pipeline_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-06-13-ner_sdoh_en (#370)

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* Add model 2023-06-13-icd10cm_umls_mapping_en (#373)

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#368)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-explain_clinical_doc_carp_en

* Add model 2023-06-13-explain_clinical_doc_era_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-explain_clinical_doc_medication_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-oncology_general_pipeline_en

* Add model 2023-06-13-oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-13-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-13-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_posology_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-13-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-13-ner_clinical_bert_pipeline_ro

* Add model 2023-06-13-ner_clinical_pipeline_ro

* Add model 2023-06-13-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-ner_covid_trials_pipeline_en

* Add model 2023-06-13-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_generic_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_pipeline_ro

* Add model 2023-06-13-ner_living_species_300_pipeline_es

* Add model 2023-06-13-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-13-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_oncology_demographics_pipeline_en

* Add model 2023-06-13-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-13-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-13-ner_oncology_test_pipeline_en

* Add model 2023-06-13-ner_oncology_therapy_pipeline_en

* Add model 2023-06-13-ner_oncology_tnm_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-13-ner_pharmacology_pipeline_es

* Add model 2023-06-13-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-13-ner_deid_generic_pipeline_it

* Add model 2023-06-13-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_it

* Add model 2023-06-13-ner_deid_synthetic_pipeline_en

* Add model 2023-06-13-ner_living_species_bert_pipeline_es

* Add model 2023-06-13-ner_living_species_bert_pipeline_fr

* Add model 2023-06-13-ner_living_species_bert_pipeline_it

* Add model 2023-06-13-ner_living_species_bert_pipeline_pt

* Add model 2023-06-13-ner_living_species_bert_pipeline_ro

* Add model 2023-06-13-ner_living_species_pipeline_ca

* Add model 2023-06-13-ner_living_species_pipeline_en

* Add model 2023-06-13-ner_living_species_pipeline_es

* Add model 2023-06-13-ner_living_species_pipeline_fr

* Add model 2023-06-13-ner_living_species_pipeline_gl

* Add model 2023-06-13-ner_living_species_pipeline_it

* Add model 2023-06-13-ner_living_species_pipeline_pt

* Add model 2023-06-13-ner_living_species_roberta_pipeline_es

* Add model 2023-06-13-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-13-ner_chemd_clinical_pipeline_en

* Add model 2023-06-13-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-13-ner_supplement_clinical_pipeline_en

* Add model 2023-06-13-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-13-ner_diag_proc_pipeline_es

* Add model 2023-06-13-ner_healthcare_pipeline_de

* Add model 2023-06-13-ner_healthcare_slim_pipeline_de

* Add model 2023-06-13-ner_neoplasms_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-13-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-13-ner_living_species_biobert_pipeline_en

* Add model 2023-06-13-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-13-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_ncbi_disease_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#375)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_drug_side_effect_en (#376)

* Add model 2023-06-14-clinical_deidentification_ar (#382)

* 2023-06-13-recognize_entities_posology_en (#378)

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en (#380)

* Add model 2023-06-15-ner_profiling_biobert_en (#397)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#399)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#400)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#401)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-clinical_deidentification_fr (#403)

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-16-ner_pharmacology_pipeline_es

* Add model 2023-06-16-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_it

* Add model 2023-06-16-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_it

* Add model 2023-06-16-ner_deid_synthetic_pipeline_en

* Add model 2023-06-16-ner_living_species_bert_pipeline_es

* Add model 2023-06-16-ner_living_species_bert_pipeline_fr

* Add model 2023-06-16-ner_living_species_bert_pipeline_it

* Add model 2023-06-16-ner_living_species_bert_pipeline_pt

* Add model 2023-06-16-ner_living_species_bert_pipeline_ro

* Add model 2023-06-16-ner_living_species_pipeline_ca

* Add model 2023-06-16-ner_living_species_pipeline_en

* Add model 2023-06-16-ner_living_species_pipeline_es

* Add model 2023-06-16-ner_living_species_pipeline_fr

* Add model 2023-06-16-ner_living_species_pipeline_gl

* Add model 2023-06-16-ner_living_species_pipeline_it

* Add model 2023-06-16-ner_living_species_pipeline_pt

* Add model 2023-06-16-ner_living_species_roberta_pipeline_es

* Add model 2023-06-16-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-16-ner_chemd_clinical_pipeline_en

* Add model 2023-06-16-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-16-ner_supplement_clinical_pipeline_en

* Add model 2023-06-16-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-16-ner_diag_proc_pipeline_es

* Add model 2023-06-16-ner_healthcare_pipeline_de

* Add model 2023-06-16-ner_healthcare_slim_pipeline_de

* Add model 2023-06-16-ner_neoplasms_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-16-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-16-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-16-ner_living_species_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_ar

* Add model 2023-06-16-ner_deid_generic_pipeline_ar

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#406)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-17-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-17-ner_pharmacology_pipeline_es

* Add model 2023-06-17-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-17-ner_deid_generic_pipeline_it

* Add model 2023-06-17-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-17-ner_deid_subentity_pipeline_it

* Add model 2023-06-17-ner_deid_synthetic_pipeline_en

* Add model 2023-06-17-ner_living_species_bert_pipeline_es

* Add model 2023-06-17-ner_living_species_bert_pipeline_fr

* Add model 2023-06-17-ner_living_species_bert_pipeline_pt

* Add model 2023-06-17-ner_living_species_bert_pipeline_ro

* Add model 2023-06-17-ner_living_species_bert_pipeline_it

* Add model 2023-06-17-ner_living_species_pipeline_ca

* Add model 2023-06-17-ner_living_species_pipeline_en

* Add model 2023-06-17-ner_living_species_pipeline_es

* Add model 2023-06-17-ner_living_species_pipeline_fr

* Add model 2023-06-17-ner_living_species_pipeline_gl

* Add model 2023-06-17-ner_living_species_pipeline_it

* Add model 2023-06-17-ner_living_species_pipeline_pt

* Add model 2023-06-17-ner_living_species_roberta_pipeline_es

* Add model 2023-06-17-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-17-ner_chemd_clinical_pipeline_en

* Add model 2023-06-17-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-17-ner_supplement_clinical_pipeline_en

* Add model 2023-06-17-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-17-ner_diag_proc_pipeline_es

* Add model 2023-06-17-ner_healthcare_pipeline_de

* Add model 2023-06-17-ner_healthcare_slim_pipeline_de

* Add model 2023-06-17-ner_neoplasms_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-17-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-17-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-17-ner_deid_generic_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-17-ner_deid_subentity_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-17-ner_living_species_biobert_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-17-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-17-ner_living_species_biobert_pipeline_en

* Add model 2023-06-17-ner_deid_generic_pipeline_ar

* Add model 2023-06-17-ner_deid_subentity_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_es

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-17-ner_profiling_biobert_en (#408)

* Add model 2023-06-17-ner_profiling_biobert_en

* Add model 2023-06-17-clinical_deidentification_en

* Add model 2023-06-17-explain_clinical_doc_carp_en

* Add model 2023-06-17-explain_clinical_doc_era_en

* Add model 2023-06-17-recognize_entities_posology_en

* Add model 2023-06-17-snomed_icd10cm_mapping_en

* Add model 2023-06-17-clinical_deidentification_glove_en

* Add model 2023-06-17-icd10cm_umls_mapping_en

* Add model 2023-06-17-icd10_icd9_mapping_en

* Add model 2023-06-17-mesh_umls_mapping_en

* Add model 2023-06-17-clinical_deidentification_es

* Add model 2023-06-17-rxnorm_mesh_mapping_en

* Add model 2023-06-17-clinical_deidentification_augmented_es

* Add model 2023-06-17-clinical_deidentification_fr

* Add model 2023-06-17-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-17-explain_clinical_doc_ade_en

* Add model 2023-06-17-clinical_deidentification_de

* Add model 2023-06-17-bert_token_classifier_ner_cellular_pipeline_en

* Add mode…
C-K-Loan added a commit that referenced this pull request Oct 19, 2023
@KshitizGIT @C-K-Loan
@rpranab @DavidChatak @aymanechilah @akrztrk @Cabir40 @jsl-models @Ahmetemintek @Damla-Gurbaz @vkocaman @mauro-nievoff @hsaglamlar @SKocer @Meryem1425 @gokhanturer @HashamUlHaq @andrei9825 @gpirge @muhammetsnts @mellahysf @dcecchini @ahmedlone127 @bunyamin-polat @ArshaanNazir @RakshitKhajuria @Prikshit7766 @ahmet-mesut @sonurdogan
Update EMR config to support yarn mode (#710)
3fd094b 
* Release/513 (#690)

* optimized EMR imports for less chance of import errors

* bump versions

* update release notes

* drop deprecated setup.py

* Endpoint tests (#637)

* example databricks serve notebooks and cluster creation

* updated healthcecks

* databricks serve + john snow labs endpoints module

* `clean_cluster` and `write_db_credentials` parameters for db cluster creation

* databricks serve + john snow labs endpoints docs + typo fixes

* databricks serve + john snow labs endpoints docs + typo fixes

* updated tests

* updated tests

* fix block_until_deployed bug

* fix block_until_deployed bug

* support for GPU and nlu.predict params in endpoints

* bump versions

* Docs update

* update notebooks

* endpoint test job generator

* improved list_db_runtime_versions

* multi cluster testing endpoints

* Support for submitting notebook to databricks and various utils & refactor to databricks utils

* db test refactor into  db_info/endpoint/hdfs/submit tests

* get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests

* add docs for notebook execution

* bump enterprise nlp version

* Update EMR initialization script (#661)

* update release notes

* update version

* Feature/513/parameterized db submit (#684)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Feature/513/list of additional db installs (#689)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Docs & example notebook for parameterized run_in_databricks

* updated noteoboks

* support for extra_pip_installs and pandas==1.5.3 fix on new clusters

* refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters

* db install  tests with custom libs

* Fix update existing databricks cluster (#680)

---------

Co-authored-by: Kshitiz <kshitiz.shakya22@gmail.com>

* Release/514 (#691)

* optimized EMR imports for less chance of import errors

* bump versions

* update release notes

* drop deprecated setup.py

* Endpoint tests (#637)

* example databricks serve notebooks and cluster creation

* updated healthcecks

* databricks serve + john snow labs endpoints module

* `clean_cluster` and `write_db_credentials` parameters for db cluster creation

* databricks serve + john snow labs endpoints docs + typo fixes

* databricks serve + john snow labs endpoints docs + typo fixes

* updated tests

* updated tests

* fix block_until_deployed bug

* fix block_until_deployed bug

* support for GPU and nlu.predict params in endpoints

* bump versions

* Docs update

* update notebooks

* endpoint test job generator

* improved list_db_runtime_versions

* multi cluster testing endpoints

* Support for submitting notebook to databricks and various utils & refactor to databricks utils

* db test refactor into  db_info/endpoint/hdfs/submit tests

* get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests

* add docs for notebook execution

* bump enterprise nlp version

* Update EMR initialization script (#661)

* update release notes

* update version

* Feature/513/parameterized db submit (#684)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Feature/513/list of additional db installs (#689)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Docs & example notebook for parameterized run_in_databricks

* updated noteoboks

* support for extra_pip_installs and pandas==1.5.3 fix on new clusters

* refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters

* db install  tests with custom libs

* Fix update existing databricks cluster (#680)

* update release notes

* bump versions

* removed pandas >= 2 htofix

---------

Co-authored-by: Kshitiz <kshitiz.shakya22@gmail.com>

* Docs/nlplab541 (#681)

* changes for 541

* changes

* added images

* missed version

* changes

* changes in git images

---------

Co-authored-by: pranab <pranab@johnsnowlabs.com>
Co-authored-by: Pranab Rajbhandari <pranabrajbhandari@Pranabs-MacBook-Pro.local>

* fastapi_api.py updated (#692)

* fix issues (#695)

* FEATURE NMH-170: Remove open source posts from johnsnowlabs repo (#694)

* Release/515 (#697)

* optimized EMR imports for less chance of import errors

* bump versions

* update release notes

* drop deprecated setup.py

* Endpoint tests (#637)

* example databricks serve notebooks and cluster creation

* updated healthcecks

* databricks serve + john snow labs endpoints module

* `clean_cluster` and `write_db_credentials` parameters for db cluster creation

* databricks serve + john snow labs endpoints docs + typo fixes

* databricks serve + john snow labs endpoints docs + typo fixes

* updated tests

* updated tests

* fix block_until_deployed bug

* fix block_until_deployed bug

* support for GPU and nlu.predict params in endpoints

* bump versions

* Docs update

* update notebooks

* endpoint test job generator

* improved list_db_runtime_versions

* multi cluster testing endpoints

* Support for submitting notebook to databricks and various utils & refactor to databricks utils

* db test refactor into  db_info/endpoint/hdfs/submit tests

* get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests

* add docs for notebook execution

* bump enterprise nlp version

* Update EMR initialization script (#661)

* update release notes

* update version

* Feature/513/parameterized db submit (#684)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Feature/513/list of additional db installs (#689)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Docs & example notebook for parameterized run_in_databricks

* updated noteoboks

* support for extra_pip_installs and pandas==1.5.3 fix on new clusters

* refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters

* db install  tests with custom libs

* Fix update existing databricks cluster (#680)

* update release notes

* bump versions

* removed pandas >= 2 htofix

* remove debug print

* bump version

---------

Co-authored-by: Kshitiz <kshitiz.shakya22@gmail.com>

* Release/516 (#698)

* optimized EMR imports for less chance of import errors

* bump versions

* update release notes

* drop deprecated setup.py

* Endpoint tests (#637)

* example databricks serve notebooks and cluster creation

* updated healthcecks

* databricks serve + john snow labs endpoints module

* `clean_cluster` and `write_db_credentials` parameters for db cluster creation

* databricks serve + john snow labs endpoints docs + typo fixes

* databricks serve + john snow labs endpoints docs + typo fixes

* updated tests

* updated tests

* fix block_until_deployed bug

* fix block_until_deployed bug

* support for GPU and nlu.predict params in endpoints

* bump versions

* Docs update

* update notebooks

* endpoint test job generator

* improved list_db_runtime_versions

* multi cluster testing endpoints

* Support for submitting notebook to databricks and various utils & refactor to databricks utils

* db test refactor into  db_info/endpoint/hdfs/submit tests

* get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests

* add docs for notebook execution

* bump enterprise nlp version

* Update EMR initialization script (#661)

* update release notes

* update version

* Feature/513/parameterized db submit (#684)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Feature/513/list of additional db installs (#689)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Docs & example notebook for parameterized run_in_databricks

* updated noteoboks

* support for extra_pip_installs and pandas==1.5.3 fix on new clusters

* refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters

* db install  tests with custom libs

* Fix update existing databricks cluster (#680)

* update release notes

* bump versions

* removed pandas >= 2 htofix

* remove debug print

* bump version

* upgrade visual to 502

* bump jsl verison

---------

Co-authored-by: Kshitiz <kshitiz.shakya22@gmail.com>

* md file update (#696)

* Models hub internal (#706)

* 2023-03-29-icd10cm_resolver_pipeline_en (#44)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-03-29-oncology_general_pipeline_en (#46)

* Add model 2023-03-29-oncology_general_pipeline_en

* Add model 2023-03-29-oncology_diagnosis_pipeline_en

* Add model 2023-03-29-oncology_biomarker_pipeline_en

* Add model 2023-03-29-icd10_icd9_mapping_en

* Add model 2023-03-29-icd10cm_snomed_mapping_en

* Add model 2023-03-29-icd10cm_umls_mapping_en

* Add model 2023-03-29-icd9_resolver_pipeline_en

* Add model 2023-03-29-icdo_snomed_mapping_en

* Add model 2023-03-29-mesh_umls_mapping_en

* Add model 2023-03-29-rxnorm_ndc_mapping_en

* Add model 2023-03-29-rxnorm_umls_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icdo_mapping_en

* Add model 2023-03-29-oncology_therapy_pipeline_en

* Add model 2023-03-29-snomed_umls_mapping_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-29-icd10cm_resolver_pipeline_en (#45)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-umls_drug_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-03-30-text_generator_biomedical_biogpt_en (#48)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-30-summarizer_generic_jsl_en (#49)

* Add model 2023-03-30-summarizer_generic_jsl_en

* Update 2023-03-30-summarizer_generic_jsl_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-03-30-summarizer_clinical_jsl_augmented_en (#51)

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Update 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en (#58)

* Add model 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Veysel Kocaman <vkocaman@gmail.com>

* 2023-03-30-ner_vop_wip_en (#52)

* Add model 2023-03-30-ner_vop_wip_en

* Update 2023-03-30-ner_vop_wip_en.md

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-03-30-umls_clinical_findings_resolver_pipeline_en (#47)

* Add model 2023-03-30-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-03-30-cvx_resolver_pipeline_en

* Add model 2023-03-30-umls_disease_syndrome_resolver_pipeline_en

* Add model 2023-03-30-umls_major_concepts_resolver_pipeline_en

* Add model 2023-03-30-umls_drug_substance_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_transform_pipeline_en

* Add model 2023-03-31-spellcheck_clinical_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-03-ner_oncology_limited_80p_for_benchmarks_en (#61)

* 2023-04-03-text_generator_biomedical_biogpt_base_en (#60)

* Delete 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-04-03-text_generator_generic_flan_base_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Add model 2023-04-04-text_generator_generic_flan_t5_large_en (#64)

* 2023-04-07-embeddings_clinical_medium_en (#75)

* Add model 2023-04-07-embeddings_clinical_medium_en

* Update 2023-04-07-embeddings_clinical_medium_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-04-07-embeddings_clinical_large_en (#79)

* 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en (#81)

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en

* Add model 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en

* Add model 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en

* added missing md files

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en

* Delete 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-04-10-medication_resolver_pipeline_en (#83)

* Add model 2023-04-10-medication_resolver_pipeline_en

* Add model 2023-04-11-medication_resolver_transform_pipeline_en

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>

* 2023-04-11-umls_clinical_findings_resolver_pipeline_en (#89)

* Add model 2023-04-11-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-04-11-umls_drug_substance_resolver_pipeline_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_vop_emb_clinical_large_wip_en (#100)

* Add model 2023-04-12-ner_vop_emb_clinical_large_wip_en

* Add model 2023-04-12-ner_vop_emb_clinical_medium_wip_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-04-12-biogpt_chat_jsl_en (#103)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_oncology_emb_clinical_large_en (#101)

* Add model 2023-04-12-ner_oncology_emb_clinical_large_en

* Add model 2023-04-12-ner_oncology_emb_clinical_medium_en

---------

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-12-ner_posology_emb_clinical_large_en (#99)

* Add model 2023-04-12-ner_posology_emb_clinical_large_en

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed the given sample text

* Add model 2023-04-12-ner_posology_emb_clinical_medium_en

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Corrected thr code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_large_en

* Update 2023-04-12-ner_deid_large_emb_clinical_large_en.md

Corrected the code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_medium_en

* Update 2023-04-12-ner_deid_large_emb_clinical_medium_en.md

corrected the python code block view

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Fixed scala code

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed scala code

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-04-12-ner_jsl_emb_clinical_medium_en (#98)

* Add model 2023-04-12-ner_jsl_emb_clinical_medium_en

* Add model 2023-04-12-ner_jsl_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en (#96)

* Add model 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en

* Add model 2023-04-12-ner_sdoh_emb_clinical_large_wip_en

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* 2023-04-13-ndc_hcpcs_mapper_en (#113)

* Add model 2023-04-13-ndc_hcpcs_mapper_en

* Add model 2023-04-13-hcpcs_ndc_mapper_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-13-medication_resolver_pipeline_en (#110)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-04-17-ner_sdoh_emb_clinical_large_wip_en (#126)

* Add model 2023-04-18-biogpt_chat_jsl_conversational_en (#130)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-04-20-explain_clinical_doc_medication_en (#140)

* Add model 2023-04-20-explain_clinical_doc_medication_en

* Add model 2023-04-20-explain_clinical_doc_radiology_en

* Add model 2023-04-20-explain_clinical_doc_ade_en

* Add model 2023-04-20-explain_clinical_doc_era_en

* Add model 2023-04-20-explain_clinical_doc_carp_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-23-summarizer_jsl_radiology_en (#145)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-20-ner_vop_anatomy_wip_en (#139)

* 2023-04-26-ner_profiling_biobert_en (#151)

* 2023-04-27-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#168)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en (#170)

* Add model 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_coverage_sbiobert_cased_mli_en

* Update 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en.md

* Update 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Halil Saglamlar <47859156+hsaglamlar@users.noreply.github.com>

* Add model 2023-05-01-bert_token_classifier_ner_jsl_en (#181)

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-04-28-icd10cm_resolver_pipeline_en (#174)

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-28-ner_profiling_biobert_en (#171)

* Add model 2023-04-28-ner_profiling_biobert_en

* Add model 2023-04-28-ner_profiling_clinical_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-05-02-ner_demographic_extended_en (#187)

Co-authored-by: andrei9825 <andrei@johnsnowlabs.com>

* Add model 2023-05-04-classifier_logreg_ade_en (#194)

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-04-ner_profiling_clinical_en (#196)

* Update 2023-05-04-bert_token_classifier_ner_jsl_en.md

Add benchmark

* fixed typos on 2023-05-04-bert_token_classifier_ner_jsl_en.md

* 2023-05-05-ner_clinical_de (#199)

* 2023-05-04-classifierml_ade_en (#197)

* 2023-05-08-summarizer_clinical_key_facts_en (#201)

* Add model 2023-05-08-summarizer_clinical_key_facts_en

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

changed model name

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

Changed description

---------

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* renamed md file

* 2023-05-09-generic_logreg_classifier_ade_en (#202)

* Add model 2023-05-09-generic_logreg_classifier_ade_en

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

corrected the indentations of the Python codes

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

changed the title

* Add model 2023-05-09-generic_svm_classifier_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>
Co-authored-by: gursev.pirge <67619330+gpirge@users.noreply.github.com>

* Add model 2023-05-08-ner_clinical_de (#200)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-05-11-biogpt_chat_jsl_conditions_en (#204)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-05-11-classifier_logreg_ade_en (#209)

* Add model 2023-05-11-classifier_logreg_ade_en

* Add model 2023-05-11-classifierml_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-12-ner_abbreviation_emb_clinical_medium_en (#214)

* Add model 2023-05-12-ner_abbreviation_emb_clinical_medium_en

* Add model 2023-05-12-ner_abbreviation_emb_clinical_large_en

* Update 2023-05-12-ner_abbreviation_emb_clinical_medium_en.md

* Update 2023-05-12-ner_abbreviation_emb_clinical_large_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-11-icd10cm_cause_claim_mapper_en (#210)

* Add model 2023-05-11-icd10cm_cause_claim_mapper_en

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The provided example is updated based on the review. Additional explanation is added for the case where there is no equivalent claim analysis code.

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The output results are changed.

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>
Co-authored-by: Samed K <110497137+SKocer@users.noreply.github.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* Add model 2023-05-13-spellcheck_drug_norvig_en (#220)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-15-ner_anatomy_emb_clinical_medium_en (#225)

* Add model 2023-05-15-ner_anatomy_emb_clinical_medium_en

* Add model 2023-05-15-ner_anatomy_emb_clinical_large_en

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-15-biogpt_pubmed_qa_en (#227)

* Add model 2023-05-15-biogpt_pubmed_qa_en

* Update 2023-05-15-biogpt_pubmed_qa_en.md

* Add model 2023-05-15-flan_t5_base_jsl_qa_en

* Update 2023-05-15-flan_t5_base_jsl_qa_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-05-17-medical_qa_biogpt_en (#234)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-20-explain_clinical_doc_era_en.md

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-28-icd10cm_resolver_pipeline_en.md

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-20-sbiobertresolve_icd10cm_augmented_en (#243)

* Add model 2023-05-20-sbiobertresolve_icd10cm_augmented_en

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-21-ner_ade_emb_clinical_medium_en (#244)

* Add model 2023-05-21-ner_ade_emb_clinical_medium_en

* Add model 2023-05-21-ner_ade_emb_clinical_large_en

* Add model 2023-05-24-ner_cellular_emb_clinical_medium_en

* Add model 2023-05-24-ner_cellular_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-05-23-ner_bacterial_species_emb_clinical_medium_en (#252)

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_medium_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_large_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-19-ner_vop_wip_en (#242)

* Add model 2023-05-19-ner_vop_wip_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_large_en

* Add model 2023-05-19-ner_vop_anatomy_wip_en

* Add model 2023-05-19-ner_vop_clinical_dept_wip_en

* Add model 2023-05-19-ner_vop_demographic_wip_en

* Add model 2023-05-19-ner_vop_problem_reduced_wip_en

* Add model 2023-05-19-ner_vop_problem_wip_en

* Add model 2023-05-19-ner_vop_temporal_wip_en

* Add model 2023-05-19-ner_vop_test_wip_en

* Add model 2023-05-19-ner_vop_treatment_wip_en

* Update 2023-05-19-ner_vop_anatomy_wip_en.md

Fixing wrong special character (").

* Update 2023-05-19-ner_vop_treatment_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_test_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_temporal_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_reduced_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_demographic_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_clinical_dept_wip_en.md

Adding sample text.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changing model name ner_vop_wip_embeddings_clinical_medium to ner_vop_wip_emb_clinical_medium.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changing model name ner_vop_wip_embeddings_clinical_large to ner_vop_wip_emb_clinical_large.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changed s3 link.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changed s3 link.

* Add model 2023-05-24-bert_sequence_classifier_vop_side_effect_en

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: mauro-nievoff <55700369+mauro-nievoff@users.noreply.github.com>

* 2023-05-24-sbiobertresolve_icd10cm_generalised_augmented_en (#256)

* 2023-05-29-summarizer_clinical_jsl_pipeline_en (#282)

* 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar (#283)

* Add model 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar

* Update 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar.md

* update md file name

* Add model 2023-05-30-ner_deid_generic_ar

* fixed typos

* fixed typos

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-29-summarizer_clinical_layman_en (#280)

* Add model 2023-05-29-summarizer_clinical_layman_en

* Update 2023-05-29-summarizer_clinical_layman_en.md

* update model name

* Added English names to the example text

---------

Co-authored-by: dcecchini <dadachini@hotmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-26-icd10cm_billable_hcc_mapper_en (#266)

* Add model 2023-05-26-icd10cm_billable_hcc_mapper_en

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

md file was fixed based on the feedback.

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-16-classifier_logreg_ade_en (#232)

* 2023-05-30-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#299)

* 2023-05-30-icd10cm_mapper_en (#295)

* 2023-05-31-sbiobertresolve_hcc_augmented_en (#304)

* Add model 2023-05-31-sbiobertresolve_hcc_augmented_en

* Update 2023-05-31-sbiobertresolve_hcc_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en (#305)

* Add model 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en

* Add model 2023-05-31-summarizer_radiology_pipeline_en

* Add model 2023-05-31-summarizer_clinical_questions_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Delete 2023-05-31-summarizer_biomedical_pubmed_pipeline_en.md

* Add model 2023-05-31-summarizer_generic_jsl_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_augmented_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-31-sbertresolve_icd10cm_slim_billable_hcc_en (#302)

* 2023-05-31-sbertresolve_icd10cm_augmented_en (#306)

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

* Update 2023-05-31-ner_deid_subentity_pipeline_ar.md

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-06-02-ner_chemicals_emb_clinical_large_en (#327)

* Add model 2023-06-06-ner_deid_generic_pipeline_ar (#351)

* 2023-06-06-ner_vop_en (#350)

* Add model 2023-06-08-ner_demographic_extended_healthcare_en (#359)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-06-summarizer_clinical_laymen_pipeline_en (#352)

* Add model 2023-06-06-summarizer_clinical_laymen_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-07-bert_token_classifier_ner_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-06-11-ner_profiling_biobert_en (#362)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-09-ner_vop_pipeline_en (#361)

* Add model 2023-06-09-ner_vop_pipeline_en

* Add model 2023-06-09-ner_vop_anatomy_pipeline_en

* Add model 2023-06-10-ner_vop_clinical_dept_pipeline_en

* Add model 2023-06-10-ner_vop_demographic_pipeline_en

* Add model 2023-06-10-ner_vop_problem_pipeline_en

* Add model 2023-06-10-ner_vop_problem_reduced_pipeline_en

* Add model 2023-06-10-ner_vop_temporal_pipeline_en

* Add model 2023-06-10-ner_vop_test_pipeline_en

* Add model 2023-06-10-ner_vop_treatment_pipeline_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-06-13-ner_sdoh_en (#370)

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* Add model 2023-06-13-icd10cm_umls_mapping_en (#373)

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#368)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-explain_clinical_doc_carp_en

* Add model 2023-06-13-explain_clinical_doc_era_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-explain_clinical_doc_medication_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-oncology_general_pipeline_en

* Add model 2023-06-13-oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-13-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-13-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_posology_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-13-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-13-ner_clinical_bert_pipeline_ro

* Add model 2023-06-13-ner_clinical_pipeline_ro

* Add model 2023-06-13-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-ner_covid_trials_pipeline_en

* Add model 2023-06-13-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_generic_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_pipeline_ro

* Add model 2023-06-13-ner_living_species_300_pipeline_es

* Add model 2023-06-13-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-13-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_oncology_demographics_pipeline_en

* Add model 2023-06-13-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-13-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-13-ner_oncology_test_pipeline_en

* Add model 2023-06-13-ner_oncology_therapy_pipeline_en

* Add model 2023-06-13-ner_oncology_tnm_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-13-ner_pharmacology_pipeline_es

* Add model 2023-06-13-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-13-ner_deid_generic_pipeline_it

* Add model 2023-06-13-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_it

* Add model 2023-06-13-ner_deid_synthetic_pipeline_en

* Add model 2023-06-13-ner_living_species_bert_pipeline_es

* Add model 2023-06-13-ner_living_species_bert_pipeline_fr

* Add model 2023-06-13-ner_living_species_bert_pipeline_it

* Add model 2023-06-13-ner_living_species_bert_pipeline_pt

* Add model 2023-06-13-ner_living_species_bert_pipeline_ro

* Add model 2023-06-13-ner_living_species_pipeline_ca

* Add model 2023-06-13-ner_living_species_pipeline_en

* Add model 2023-06-13-ner_living_species_pipeline_es

* Add model 2023-06-13-ner_living_species_pipeline_fr

* Add model 2023-06-13-ner_living_species_pipeline_gl

* Add model 2023-06-13-ner_living_species_pipeline_it

* Add model 2023-06-13-ner_living_species_pipeline_pt

* Add model 2023-06-13-ner_living_species_roberta_pipeline_es

* Add model 2023-06-13-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-13-ner_chemd_clinical_pipeline_en

* Add model 2023-06-13-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-13-ner_supplement_clinical_pipeline_en

* Add model 2023-06-13-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-13-ner_diag_proc_pipeline_es

* Add model 2023-06-13-ner_healthcare_pipeline_de

* Add model 2023-06-13-ner_healthcare_slim_pipeline_de

* Add model 2023-06-13-ner_neoplasms_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-13-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-13-ner_living_species_biobert_pipeline_en

* Add model 2023-06-13-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-13-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_ncbi_disease_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#375)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_drug_side_effect_en (#376)

* Add model 2023-06-14-clinical_deidentification_ar (#382)

* 2023-06-13-recognize_entities_posology_en (#378)

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en (#380)

* Add model 2023-06-15-ner_profiling_biobert_en (#397)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#399)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#400)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#401)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-clinical_deidentification_fr (#403)

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-16-ner_pharmacology_pipeline_es

* Add model 2023-06-16-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_it

* Add model 2023-06-16-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_it

* Add model 2023-06-16-ner_deid_synthetic_pipeline_en

* Add model 2023-06-16-ner_living_species_bert_pipeline_es

* Add model 2023-06-16-ner_living_species_bert_pipeline_fr

* Add model 2023-06-16-ner_living_species_bert_pipeline_it

* Add model 2023-06-16-ner_living_species_bert_pipeline_pt

* Add model 2023-06-16-ner_living_species_bert_pipeline_ro

* Add model 2023-06-16-ner_living_species_pipeline_ca

* Add model 2023-06-16-ner_living_species_pipeline_en

* Add model 2023-06-16-ner_living_species_pipeline_es

* Add model 2023-06-16-ner_living_species_pipeline_fr

* Add model 2023-06-16-ner_living_species_pipeline_gl

* Add model 2023-06-16-ner_living_species_pipeline_it

* Add model 2023-06-16-ner_living_species_pipeline_pt

* Add model 2023-06-16-ner_living_species_roberta_pipeline_es

* Add model 2023-06-16-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-16-ner_chemd_clinical_pipeline_en

* Add model 2023-06-16-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-16-ner_supplement_clinical_pipeline_en

* Add model 2023-06-16-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-16-ner_diag_proc_pipeline_es

* Add model 2023-06-16-ner_healthcare_pipeline_de

* Add model 2023-06-16-ner_healthcare_slim_pipeline_de

* Add model 2023-06-16-ner_neoplasms_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-16-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-16-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-16-ner_living_species_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_ar

* Add model 2023-06-16-ner_deid_generic_pipeline_ar

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#406)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ne…
C-K-Loan added a commit that referenced this pull request Oct 19, 2023
@C-K-Loan @KshitizGIT
@rpranab @DavidChatak @aymanechilah @akrztrk @Cabir40 @jsl-models @Ahmetemintek @Damla-Gurbaz @vkocaman @mauro-nievoff @hsaglamlar @SKocer @Meryem1425 @gokhanturer @HashamUlHaq @andrei9825 @gpirge @muhammetsnts @mellahysf @dcecchini @ahmedlone127 @bunyamin-polat @ArshaanNazir @RakshitKhajuria @Prikshit7766 @ahmet-mesut @sonurdogan
Release/517 (#713)
f22aac3 
* optimized EMR imports for less chance of import errors

* bump versions

* update release notes

* drop deprecated setup.py

* Endpoint tests (#637)

* example databricks serve notebooks and cluster creation

* updated healthcecks

* databricks serve + john snow labs endpoints module

* `clean_cluster` and `write_db_credentials` parameters for db cluster creation

* databricks serve + john snow labs endpoints docs + typo fixes

* databricks serve + john snow labs endpoints docs + typo fixes

* updated tests

* updated tests

* fix block_until_deployed bug

* fix block_until_deployed bug

* support for GPU and nlu.predict params in endpoints

* bump versions

* Docs update

* update notebooks

* endpoint test job generator

* improved list_db_runtime_versions

* multi cluster testing endpoints

* Support for submitting notebook to databricks and various utils & refactor to databricks utils

* db test refactor into  db_info/endpoint/hdfs/submit tests

* get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests

* add docs for notebook execution

* bump enterprise nlp version

* Update EMR initialization script (#661)

* update release notes

* update version

* Feature/513/parameterized db submit (#684)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Feature/513/list of additional db installs (#689)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Docs & example notebook for parameterized run_in_databricks

* updated noteoboks

* support for extra_pip_installs and pandas==1.5.3 fix on new clusters

* refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters

* db install  tests with custom libs

* Fix update existing databricks cluster (#680)

* update release notes

* bump versions

* removed pandas >= 2 htofix

* remove debug print

* bump version

* upgrade visual to 502

* bump jsl verison

* Update EMR config to support yarn mode (#710)

* Release/513 (#690)

* optimized EMR imports for less chance of import errors

* bump versions

* update release notes

* drop deprecated setup.py

* Endpoint tests (#637)

* example databricks serve notebooks and cluster creation

* updated healthcecks

* databricks serve + john snow labs endpoints module

* `clean_cluster` and `write_db_credentials` parameters for db cluster creation

* databricks serve + john snow labs endpoints docs + typo fixes

* databricks serve + john snow labs endpoints docs + typo fixes

* updated tests

* updated tests

* fix block_until_deployed bug

* fix block_until_deployed bug

* support for GPU and nlu.predict params in endpoints

* bump versions

* Docs update

* update notebooks

* endpoint test job generator

* improved list_db_runtime_versions

* multi cluster testing endpoints

* Support for submitting notebook to databricks and various utils & refactor to databricks utils

* db test refactor into  db_info/endpoint/hdfs/submit tests

* get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests

* add docs for notebook execution

* bump enterprise nlp version

* Update EMR initialization script (#661)

* update release notes

* update version

* Feature/513/parameterized db submit (#684)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Feature/513/list of additional db installs (#689)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Docs & example notebook for parameterized run_in_databricks

* updated noteoboks

* support for extra_pip_installs and pandas==1.5.3 fix on new clusters

* refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters

* db install  tests with custom libs

* Fix update existing databricks cluster (#680)

---------

Co-authored-by: Kshitiz <kshitiz.shakya22@gmail.com>

* Release/514 (#691)

* optimized EMR imports for less chance of import errors

* bump versions

* update release notes

* drop deprecated setup.py

* Endpoint tests (#637)

* example databricks serve notebooks and cluster creation

* updated healthcecks

* databricks serve + john snow labs endpoints module

* `clean_cluster` and `write_db_credentials` parameters for db cluster creation

* databricks serve + john snow labs endpoints docs + typo fixes

* databricks serve + john snow labs endpoints docs + typo fixes

* updated tests

* updated tests

* fix block_until_deployed bug

* fix block_until_deployed bug

* support for GPU and nlu.predict params in endpoints

* bump versions

* Docs update

* update notebooks

* endpoint test job generator

* improved list_db_runtime_versions

* multi cluster testing endpoints

* Support for submitting notebook to databricks and various utils & refactor to databricks utils

* db test refactor into  db_info/endpoint/hdfs/submit tests

* get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests

* add docs for notebook execution

* bump enterprise nlp version

* Update EMR initialization script (#661)

* update release notes

* update version

* Feature/513/parameterized db submit (#684)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Feature/513/list of additional db installs (#689)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Docs & example notebook for parameterized run_in_databricks

* updated noteoboks

* support for extra_pip_installs and pandas==1.5.3 fix on new clusters

* refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters

* db install  tests with custom libs

* Fix update existing databricks cluster (#680)

* update release notes

* bump versions

* removed pandas >= 2 htofix

---------

Co-authored-by: Kshitiz <kshitiz.shakya22@gmail.com>

* Docs/nlplab541 (#681)

* changes for 541

* changes

* added images

* missed version

* changes

* changes in git images

---------

Co-authored-by: pranab <pranab@johnsnowlabs.com>
Co-authored-by: Pranab Rajbhandari <pranabrajbhandari@Pranabs-MacBook-Pro.local>

* fastapi_api.py updated (#692)

* fix issues (#695)

* FEATURE NMH-170: Remove open source posts from johnsnowlabs repo (#694)

* Release/515 (#697)

* optimized EMR imports for less chance of import errors

* bump versions

* update release notes

* drop deprecated setup.py

* Endpoint tests (#637)

* example databricks serve notebooks and cluster creation

* updated healthcecks

* databricks serve + john snow labs endpoints module

* `clean_cluster` and `write_db_credentials` parameters for db cluster creation

* databricks serve + john snow labs endpoints docs + typo fixes

* databricks serve + john snow labs endpoints docs + typo fixes

* updated tests

* updated tests

* fix block_until_deployed bug

* fix block_until_deployed bug

* support for GPU and nlu.predict params in endpoints

* bump versions

* Docs update

* update notebooks

* endpoint test job generator

* improved list_db_runtime_versions

* multi cluster testing endpoints

* Support for submitting notebook to databricks and various utils & refactor to databricks utils

* db test refactor into  db_info/endpoint/hdfs/submit tests

* get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests

* add docs for notebook execution

* bump enterprise nlp version

* Update EMR initialization script (#661)

* update release notes

* update version

* Feature/513/parameterized db submit (#684)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Feature/513/list of additional db installs (#689)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Docs & example notebook for parameterized run_in_databricks

* updated noteoboks

* support for extra_pip_installs and pandas==1.5.3 fix on new clusters

* refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters

* db install  tests with custom libs

* Fix update existing databricks cluster (#680)

* update release notes

* bump versions

* removed pandas >= 2 htofix

* remove debug print

* bump version

---------

Co-authored-by: Kshitiz <kshitiz.shakya22@gmail.com>

* Release/516 (#698)

* optimized EMR imports for less chance of import errors

* bump versions

* update release notes

* drop deprecated setup.py

* Endpoint tests (#637)

* example databricks serve notebooks and cluster creation

* updated healthcecks

* databricks serve + john snow labs endpoints module

* `clean_cluster` and `write_db_credentials` parameters for db cluster creation

* databricks serve + john snow labs endpoints docs + typo fixes

* databricks serve + john snow labs endpoints docs + typo fixes

* updated tests

* updated tests

* fix block_until_deployed bug

* fix block_until_deployed bug

* support for GPU and nlu.predict params in endpoints

* bump versions

* Docs update

* update notebooks

* endpoint test job generator

* improved list_db_runtime_versions

* multi cluster testing endpoints

* Support for submitting notebook to databricks and various utils & refactor to databricks utils

* db test refactor into  db_info/endpoint/hdfs/submit tests

* get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests

* add docs for notebook execution

* bump enterprise nlp version

* Update EMR initialization script (#661)

* update release notes

* update version

* Feature/513/parameterized db submit (#684)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Feature/513/list of additional db installs (#689)

* support for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* tests for parameterization of NB sumit runs in run_in_databricks()

* Docs & example notebook for parameterized run_in_databricks

* Docs & example notebook for parameterized run_in_databricks

* updated noteoboks

* support for extra_pip_installs and pandas==1.5.3 fix on new clusters

* refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters

* db install  tests with custom libs

* Fix update existing databricks cluster (#680)

* update release notes

* bump versions

* removed pandas >= 2 htofix

* remove debug print

* bump version

* upgrade visual to 502

* bump jsl verison

---------

Co-authored-by: Kshitiz <kshitiz.shakya22@gmail.com>

* md file update (#696)

* Models hub internal (#706)

* 2023-03-29-icd10cm_resolver_pipeline_en (#44)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-03-29-oncology_general_pipeline_en (#46)

* Add model 2023-03-29-oncology_general_pipeline_en

* Add model 2023-03-29-oncology_diagnosis_pipeline_en

* Add model 2023-03-29-oncology_biomarker_pipeline_en

* Add model 2023-03-29-icd10_icd9_mapping_en

* Add model 2023-03-29-icd10cm_snomed_mapping_en

* Add model 2023-03-29-icd10cm_umls_mapping_en

* Add model 2023-03-29-icd9_resolver_pipeline_en

* Add model 2023-03-29-icdo_snomed_mapping_en

* Add model 2023-03-29-mesh_umls_mapping_en

* Add model 2023-03-29-rxnorm_ndc_mapping_en

* Add model 2023-03-29-rxnorm_umls_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icdo_mapping_en

* Add model 2023-03-29-oncology_therapy_pipeline_en

* Add model 2023-03-29-snomed_umls_mapping_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-29-icd10cm_resolver_pipeline_en (#45)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-umls_drug_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-03-30-text_generator_biomedical_biogpt_en (#48)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-30-summarizer_generic_jsl_en (#49)

* Add model 2023-03-30-summarizer_generic_jsl_en

* Update 2023-03-30-summarizer_generic_jsl_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-03-30-summarizer_clinical_jsl_augmented_en (#51)

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Update 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en (#58)

* Add model 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Veysel Kocaman <vkocaman@gmail.com>

* 2023-03-30-ner_vop_wip_en (#52)

* Add model 2023-03-30-ner_vop_wip_en

* Update 2023-03-30-ner_vop_wip_en.md

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-03-30-umls_clinical_findings_resolver_pipeline_en (#47)

* Add model 2023-03-30-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-03-30-cvx_resolver_pipeline_en

* Add model 2023-03-30-umls_disease_syndrome_resolver_pipeline_en

* Add model 2023-03-30-umls_major_concepts_resolver_pipeline_en

* Add model 2023-03-30-umls_drug_substance_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_transform_pipeline_en

* Add model 2023-03-31-spellcheck_clinical_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-03-ner_oncology_limited_80p_for_benchmarks_en (#61)

* 2023-04-03-text_generator_biomedical_biogpt_base_en (#60)

* Delete 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-04-03-text_generator_generic_flan_base_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Add model 2023-04-04-text_generator_generic_flan_t5_large_en (#64)

* 2023-04-07-embeddings_clinical_medium_en (#75)

* Add model 2023-04-07-embeddings_clinical_medium_en

* Update 2023-04-07-embeddings_clinical_medium_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-04-07-embeddings_clinical_large_en (#79)

* 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en (#81)

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en

* Add model 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en

* Add model 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en

* added missing md files

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en

* Delete 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-04-10-medication_resolver_pipeline_en (#83)

* Add model 2023-04-10-medication_resolver_pipeline_en

* Add model 2023-04-11-medication_resolver_transform_pipeline_en

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>

* 2023-04-11-umls_clinical_findings_resolver_pipeline_en (#89)

* Add model 2023-04-11-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-04-11-umls_drug_substance_resolver_pipeline_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_vop_emb_clinical_large_wip_en (#100)

* Add model 2023-04-12-ner_vop_emb_clinical_large_wip_en

* Add model 2023-04-12-ner_vop_emb_clinical_medium_wip_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-04-12-biogpt_chat_jsl_en (#103)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_oncology_emb_clinical_large_en (#101)

* Add model 2023-04-12-ner_oncology_emb_clinical_large_en

* Add model 2023-04-12-ner_oncology_emb_clinical_medium_en

---------

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-12-ner_posology_emb_clinical_large_en (#99)

* Add model 2023-04-12-ner_posology_emb_clinical_large_en

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed the given sample text

* Add model 2023-04-12-ner_posology_emb_clinical_medium_en

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Corrected thr code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_large_en

* Update 2023-04-12-ner_deid_large_emb_clinical_large_en.md

Corrected the code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_medium_en

* Update 2023-04-12-ner_deid_large_emb_clinical_medium_en.md

corrected the python code block view

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Fixed scala code

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed scala code

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-04-12-ner_jsl_emb_clinical_medium_en (#98)

* Add model 2023-04-12-ner_jsl_emb_clinical_medium_en

* Add model 2023-04-12-ner_jsl_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en (#96)

* Add model 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en

* Add model 2023-04-12-ner_sdoh_emb_clinical_large_wip_en

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* 2023-04-13-ndc_hcpcs_mapper_en (#113)

* Add model 2023-04-13-ndc_hcpcs_mapper_en

* Add model 2023-04-13-hcpcs_ndc_mapper_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-13-medication_resolver_pipeline_en (#110)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-04-17-ner_sdoh_emb_clinical_large_wip_en (#126)

* Add model 2023-04-18-biogpt_chat_jsl_conversational_en (#130)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-04-20-explain_clinical_doc_medication_en (#140)

* Add model 2023-04-20-explain_clinical_doc_medication_en

* Add model 2023-04-20-explain_clinical_doc_radiology_en

* Add model 2023-04-20-explain_clinical_doc_ade_en

* Add model 2023-04-20-explain_clinical_doc_era_en

* Add model 2023-04-20-explain_clinical_doc_carp_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-23-summarizer_jsl_radiology_en (#145)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-20-ner_vop_anatomy_wip_en (#139)

* 2023-04-26-ner_profiling_biobert_en (#151)

* 2023-04-27-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#168)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en (#170)

* Add model 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_coverage_sbiobert_cased_mli_en

* Update 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en.md

* Update 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Halil Saglamlar <47859156+hsaglamlar@users.noreply.github.com>

* Add model 2023-05-01-bert_token_classifier_ner_jsl_en (#181)

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-04-28-icd10cm_resolver_pipeline_en (#174)

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-28-ner_profiling_biobert_en (#171)

* Add model 2023-04-28-ner_profiling_biobert_en

* Add model 2023-04-28-ner_profiling_clinical_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-05-02-ner_demographic_extended_en (#187)

Co-authored-by: andrei9825 <andrei@johnsnowlabs.com>

* Add model 2023-05-04-classifier_logreg_ade_en (#194)

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-04-ner_profiling_clinical_en (#196)

* Update 2023-05-04-bert_token_classifier_ner_jsl_en.md

Add benchmark

* fixed typos on 2023-05-04-bert_token_classifier_ner_jsl_en.md

* 2023-05-05-ner_clinical_de (#199)

* 2023-05-04-classifierml_ade_en (#197)

* 2023-05-08-summarizer_clinical_key_facts_en (#201)

* Add model 2023-05-08-summarizer_clinical_key_facts_en

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

changed model name

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

Changed description

---------

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* renamed md file

* 2023-05-09-generic_logreg_classifier_ade_en (#202)

* Add model 2023-05-09-generic_logreg_classifier_ade_en

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

corrected the indentations of the Python codes

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

changed the title

* Add model 2023-05-09-generic_svm_classifier_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>
Co-authored-by: gursev.pirge <67619330+gpirge@users.noreply.github.com>

* Add model 2023-05-08-ner_clinical_de (#200)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-05-11-biogpt_chat_jsl_conditions_en (#204)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-05-11-classifier_logreg_ade_en (#209)

* Add model 2023-05-11-classifier_logreg_ade_en

* Add model 2023-05-11-classifierml_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-12-ner_abbreviation_emb_clinical_medium_en (#214)

* Add model 2023-05-12-ner_abbreviation_emb_clinical_medium_en

* Add model 2023-05-12-ner_abbreviation_emb_clinical_large_en

* Update 2023-05-12-ner_abbreviation_emb_clinical_medium_en.md

* Update 2023-05-12-ner_abbreviation_emb_clinical_large_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-11-icd10cm_cause_claim_mapper_en (#210)

* Add model 2023-05-11-icd10cm_cause_claim_mapper_en

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The provided example is updated based on the review. Additional explanation is added for the case where there is no equivalent claim analysis code.

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The output results are changed.

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>
Co-authored-by: Samed K <110497137+SKocer@users.noreply.github.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* Add model 2023-05-13-spellcheck_drug_norvig_en (#220)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-15-ner_anatomy_emb_clinical_medium_en (#225)

* Add model 2023-05-15-ner_anatomy_emb_clinical_medium_en

* Add model 2023-05-15-ner_anatomy_emb_clinical_large_en

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-15-biogpt_pubmed_qa_en (#227)

* Add model 2023-05-15-biogpt_pubmed_qa_en

* Update 2023-05-15-biogpt_pubmed_qa_en.md

* Add model 2023-05-15-flan_t5_base_jsl_qa_en

* Update 2023-05-15-flan_t5_base_jsl_qa_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-05-17-medical_qa_biogpt_en (#234)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-20-explain_clinical_doc_era_en.md

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-28-icd10cm_resolver_pipeline_en.md

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-20-sbiobertresolve_icd10cm_augmented_en (#243)

* Add model 2023-05-20-sbiobertresolve_icd10cm_augmented_en

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-21-ner_ade_emb_clinical_medium_en (#244)

* Add model 2023-05-21-ner_ade_emb_clinical_medium_en

* Add model 2023-05-21-ner_ade_emb_clinical_large_en

* Add model 2023-05-24-ner_cellular_emb_clinical_medium_en

* Add model 2023-05-24-ner_cellular_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-05-23-ner_bacterial_species_emb_clinical_medium_en (#252)

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_medium_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_large_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-19-ner_vop_wip_en (#242)

* Add model 2023-05-19-ner_vop_wip_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_large_en

* Add model 2023-05-19-ner_vop_anatomy_wip_en

* Add model 2023-05-19-ner_vop_clinical_dept_wip_en

* Add model 2023-05-19-ner_vop_demographic_wip_en

* Add model 2023-05-19-ner_vop_problem_reduced_wip_en

* Add model 2023-05-19-ner_vop_problem_wip_en

* Add model 2023-05-19-ner_vop_temporal_wip_en

* Add model 2023-05-19-ner_vop_test_wip_en

* Add model 2023-05-19-ner_vop_treatment_wip_en

* Update 2023-05-19-ner_vop_anatomy_wip_en.md

Fixing wrong special character (").

* Update 2023-05-19-ner_vop_treatment_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_test_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_temporal_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_reduced_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_demographic_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_clinical_dept_wip_en.md

Adding sample text.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changing model name ner_vop_wip_embeddings_clinical_medium to ner_vop_wip_emb_clinical_medium.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changing model name ner_vop_wip_embeddings_clinical_large to ner_vop_wip_emb_clinical_large.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changed s3 link.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changed s3 link.

* Add model 2023-05-24-bert_sequence_classifier_vop_side_effect_en

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: mauro-nievoff <55700369+mauro-nievoff@users.noreply.github.com>

* 2023-05-24-sbiobertresolve_icd10cm_generalised_augmented_en (#256)

* 2023-05-29-summarizer_clinical_jsl_pipeline_en (#282)

* 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar (#283)

* Add model 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar

* Update 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar.md

* update md file name

* Add model 2023-05-30-ner_deid_generic_ar

* fixed typos

* fixed typos

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-29-summarizer_clinical_layman_en (#280)

* Add model 2023-05-29-summarizer_clinical_layman_en

* Update 2023-05-29-summarizer_clinical_layman_en.md

* update model name

* Added English names to the example text

---------

Co-authored-by: dcecchini <dadachini@hotmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-26-icd10cm_billable_hcc_mapper_en (#266)

* Add model 2023-05-26-icd10cm_billable_hcc_mapper_en

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

md file was fixed based on the feedback.

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-16-classifier_logreg_ade_en (#232)

* 2023-05-30-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#299)

* 2023-05-30-icd10cm_mapper_en (#295)

* 2023-05-31-sbiobertresolve_hcc_augmented_en (#304)

* Add model 2023-05-31-sbiobertresolve_hcc_augmented_en

* Update 2023-05-31-sbiobertresolve_hcc_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en (#305)

* Add model 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en

* Add model 2023-05-31-summarizer_radiology_pipeline_en

* Add model 2023-05-31-summarizer_clinical_questions_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Delete 2023-05-31-summarizer_biomedical_pubmed_pipeline_en.md

* Add model 2023-05-31-summarizer_generic_jsl_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_augmented_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-31-sbertresolve_icd10cm_slim_billable_hcc_en (#302)

* 2023-05-31-sbertresolve_icd10cm_augmented_en (#306)

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

* Update 2023-05-31-ner_deid_subentity_pipeline_ar.md

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-06-02-ner_chemicals_emb_clinical_large_en (#327)

* Add model 2023-06-06-ner_deid_generic_pipeline_ar (#351)

* 2023-06-06-ner_vop_en (#350)

* Add model 2023-06-08-ner_demographic_extended_healthcare_en (#359)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-06-summarizer_clinical_laymen_pipeline_en (#352)

* Add model 2023-06-06-summarizer_clinical_laymen_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-07-bert_token_classifier_ner_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-06-11-ner_profiling_biobert_en (#362)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-09-ner_vop_pipeline_en (#361)

* Add model 2023-06-09-ner_vop_pipeline_en

* Add model 2023-06-09-ner_vop_anatomy_pipeline_en

* Add model 2023-06-10-ner_vop_clinical_dept_pipeline_en

* Add model 2023-06-10-ner_vop_demographic_pipeline_en

* Add model 2023-06-10-ner_vop_problem_pipeline_en

* Add model 2023-06-10-ner_vop_problem_reduced_pipeline_en

* Add model 2023-06-10-ner_vop_temporal_pipeline_en

* Add model 2023-06-10-ner_vop_test_pipeline_en

* Add model 2023-06-10-ner_vop_treatment_pipeline_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-06-13-ner_sdoh_en (#370)

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* Add model 2023-06-13-icd10cm_umls_mapping_en (#373)

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#368)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-explain_clinical_doc_carp_en

* Add model 2023-06-13-explain_clinical_doc_era_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-explain_clinical_doc_medication_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-oncology_general_pipeline_en

* Add model 2023-06-13-oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-13-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-13-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_posology_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-13-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-13-ner_clinical_bert_pipeline_ro

* Add model 2023-06-13-ner_clinical_pipeline_ro

* Add model 2023-06-13-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-ner_covid_trials_pipeline_en

* Add model 2023-06-13-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_generic_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_pipeline_ro

* Add model 2023-06-13-ner_living_species_300_pipeline_es

* Add model 2023-06-13-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-13-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_oncology_demographics_pipeline_en

* Add model 2023-06-13-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-13-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-13-ner_oncology_test_pipeline_en

* Add model 2023-06-13-ner_oncology_therapy_pipeline_en

* Add model 2023-06-13-ner_oncology_tnm_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-13-ner_pharmacology_pipeline_es

* Add model 2023-06-13-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-13-ner_deid_generic_pipeline_it

* Add model 2023-06-13-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_it

* Add model 2023-06-13-ner_deid_synthetic_pipeline_en

* Add model 2023-06-13-ner_living_species_bert_pipeline_es

* Add model 2023-06-13-ner_living_species_bert_pipeline_fr

* Add model 2023-06-13-ner_living_species_bert_pipeline_it

* Add model 2023-06-13-ner_living_species_bert_pipeline_pt

* Add model 2023-06-13-ner_living_species_bert_pipeline_ro

* Add model 2023-06-13-ner_living_species_pipeline_ca

* Add model 2023-06-13-ner_living_species_pipeline_en

* Add model 2023-06-13-ner_living_species_pipeline_es

* Add model 2023-06-13-ner_living_species_pipeline_fr

* Add model 2023-06-13-ner_living_species_pipeline_gl

* Add model 2023-06-13-ner_living_species_pipeline_it

* Add model 2023-06-13-ner_living_species_pipeline_pt

* Add model 2023-06-13-ner_living_species_roberta_pipeline_es

* Add model 2023-06-13-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-13-ner_chemd_clinical_pipeline_en

* Add model 2023-06-13-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-13-ner_supplement_clinical_pipeline_en

* Add model 2023-06-13-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-13-ner_diag_proc_pipeline_es

* Add model 2023-06-13-ner_healthcare_pipeline_de

* Add model 2023-06-13-ner_healthcare_slim_pipeline_de

* Add model 2023-06-13-ner_neoplasms_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-13-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-13-ner_living_species_biobert_pipeline_en

* Add model 2023-06-13-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-13-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_ncbi_disease_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#375)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_drug_side_effect_en (#376)

* Add model 2023-06-14-clinical_deidentification_ar (#382)

* 2023-06-13-recognize_entities_posology_en (#378)

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en (#380)

* Add model 2023-06-15-ner_profiling_biobert_en (#397)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#399)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#400)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#401)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-clinical_deidentification_fr (#403)

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-16-ner_pharmacology_pipeline_es

* Add model 2023-06-16-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_it

* Add model 2023-06-16-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_it

* Add model 2023-06-16-ner_deid_synthetic_pipeline_en

* Add model 2023-06-16-ner_living_species_bert_pipeline_es

* Add model 2023-06-16-ner_living_species_bert_pipeline_fr

* Add model 2023-06-16-ner_living_species_bert_pipeline_it

* Add model 2023-06-16-ner_living_species_bert_pipeline_pt

* Add model 2023-06-16-ner_living_species_bert_pipeline_ro

* Add model 2023-06-16-ner_living_species_pipeline_ca

* Add model 2023-06-16-ner_living_species_pipeline_en

* Add model 2023-06-16-ner_living_species_pipeline_es

* Add model 2023-06-16-ner_living_species_pipeline_fr

* Add model 2023-06-16-ner_living_species_pipeline_gl

* Add model 2023-06-16-ner_living_species_pipeline_it

* Add model 2023-06-16-ner_living_species_pipeline_pt

* Add model 2023-06-16-ner_living_species_roberta_pipeline_es

* Add model 2023-06-16-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-16-ner_chemd_clinical_pipeline_en

* Add model 2023-06-16-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-16-ner_supplement_clinical_pipeline_en

* Add model 2023-06-16-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-16-ner_diag_proc_pipeline_es

* Add model 2023-06-16-ner_healthcare_pipeline_de

* Add model 2023-06-16-ner_healthcare_slim_pipeline_de

* Add model 2023-06-16-ner_neoplasms_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-16-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-16-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-16-ner_living_species_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_ar

* Add model 2023-06-16-ner_deid_generic_pipeline_ar

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#406)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add…
vkocaman added a commit that referenced this pull request Nov 10, 2023
@Cabir40 @jsl-models
@Ahmetemintek @Damla-Gurbaz @vkocaman @mauro-nievoff @hsaglamlar @SKocer @Meryem1425 @gokhanturer @HashamUlHaq @andrei9825 @gpirge @muhammetsnts @mellahysf @dcecchini @ahmedlone127 @C-K-Loan @bunyamin-polat @ArshaanNazir @RakshitKhajuria @Prikshit7766 @ahmet-mesut @aymanechilah @sonurdogan @akrztrk
Models hub internal to Main (#749)
7fe0876 
* 2023-03-29-icd10cm_resolver_pipeline_en (#44)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-03-29-oncology_general_pipeline_en (#46)

* Add model 2023-03-29-oncology_general_pipeline_en

* Add model 2023-03-29-oncology_diagnosis_pipeline_en

* Add model 2023-03-29-oncology_biomarker_pipeline_en

* Add model 2023-03-29-icd10_icd9_mapping_en

* Add model 2023-03-29-icd10cm_snomed_mapping_en

* Add model 2023-03-29-icd10cm_umls_mapping_en

* Add model 2023-03-29-icd9_resolver_pipeline_en

* Add model 2023-03-29-icdo_snomed_mapping_en

* Add model 2023-03-29-mesh_umls_mapping_en

* Add model 2023-03-29-rxnorm_ndc_mapping_en

* Add model 2023-03-29-rxnorm_umls_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icd10cm_mapping_en

* Add model 2023-03-29-snomed_icdo_mapping_en

* Add model 2023-03-29-oncology_therapy_pipeline_en

* Add model 2023-03-29-snomed_umls_mapping_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-29-icd10cm_resolver_pipeline_en (#45)

* Add model 2023-03-29-icd10cm_resolver_pipeline_en

* Add model 2023-03-29-umls_drug_resolver_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-03-30-text_generator_biomedical_biogpt_en (#48)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-03-30-summarizer_generic_jsl_en (#49)

* Add model 2023-03-30-summarizer_generic_jsl_en

* Update 2023-03-30-summarizer_generic_jsl_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-03-30-summarizer_clinical_jsl_augmented_en (#51)

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Update 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en (#58)

* Add model 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

* Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Veysel Kocaman <vkocaman@gmail.com>

* 2023-03-30-ner_vop_wip_en (#52)

* Add model 2023-03-30-ner_vop_wip_en

* Update 2023-03-30-ner_vop_wip_en.md

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-03-30-umls_clinical_findings_resolver_pipeline_en (#47)

* Add model 2023-03-30-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-03-30-cvx_resolver_pipeline_en

* Add model 2023-03-30-umls_disease_syndrome_resolver_pipeline_en

* Add model 2023-03-30-umls_major_concepts_resolver_pipeline_en

* Add model 2023-03-30-umls_drug_substance_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_pipeline_en

* Add model 2023-03-31-medication_resolver_transform_pipeline_en

* Add model 2023-03-31-spellcheck_clinical_pipeline_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-03-ner_oncology_limited_80p_for_benchmarks_en (#61)

* 2023-04-03-text_generator_biomedical_biogpt_base_en (#60)

* Delete 2023-03-30-text_generator_biomedical_biogpt_en.md

* Update 2023-04-03-text_generator_generic_flan_base_en.md

* Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md

* Update 2023-03-30-summarizer_generic_jsl_en.md

* Add model 2023-04-04-text_generator_generic_flan_t5_large_en (#64)

* 2023-04-07-embeddings_clinical_medium_en (#75)

* Add model 2023-04-07-embeddings_clinical_medium_en

* Update 2023-04-07-embeddings_clinical_medium_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-04-07-embeddings_clinical_large_en (#79)

* 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en (#81)

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en

* Add model 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en

* Add model 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en

* added missing md files

* Add model 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en

* Delete 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

* Update 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md

* Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-04-10-medication_resolver_pipeline_en (#83)

* Add model 2023-04-10-medication_resolver_pipeline_en

* Add model 2023-04-11-medication_resolver_transform_pipeline_en

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>

* 2023-04-11-umls_clinical_findings_resolver_pipeline_en (#89)

* Add model 2023-04-11-umls_clinical_findings_resolver_pipeline_en

* Add model 2023-04-11-umls_drug_substance_resolver_pipeline_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_vop_emb_clinical_large_wip_en (#100)

* Add model 2023-04-12-ner_vop_emb_clinical_large_wip_en

* Add model 2023-04-12-ner_vop_emb_clinical_medium_wip_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-04-12-biogpt_chat_jsl_en (#103)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-12-ner_oncology_emb_clinical_large_en (#101)

* Add model 2023-04-12-ner_oncology_emb_clinical_large_en

* Add model 2023-04-12-ner_oncology_emb_clinical_medium_en

---------

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-12-ner_posology_emb_clinical_large_en (#99)

* Add model 2023-04-12-ner_posology_emb_clinical_large_en

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed the given sample text

* Add model 2023-04-12-ner_posology_emb_clinical_medium_en

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Corrected thr code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_large_en

* Update 2023-04-12-ner_deid_large_emb_clinical_large_en.md

Corrected the code block view

* Add model 2023-04-12-ner_deid_large_emb_clinical_medium_en

* Update 2023-04-12-ner_deid_large_emb_clinical_medium_en.md

corrected the python code block view

* Update 2023-04-12-ner_posology_emb_clinical_medium_en.md

Fixed scala code

* Update 2023-04-12-ner_posology_emb_clinical_large_en.md

Fixed scala code

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-04-12-ner_jsl_emb_clinical_medium_en (#98)

* Add model 2023-04-12-ner_jsl_emb_clinical_medium_en

* Add model 2023-04-12-ner_jsl_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en (#96)

* Add model 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en

* Add model 2023-04-12-ner_sdoh_emb_clinical_large_wip_en

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* 2023-04-13-ndc_hcpcs_mapper_en (#113)

* Add model 2023-04-13-ndc_hcpcs_mapper_en

* Add model 2023-04-13-hcpcs_ndc_mapper_en

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-04-13-medication_resolver_pipeline_en (#110)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-04-17-ner_sdoh_emb_clinical_large_wip_en (#126)

* Add model 2023-04-18-biogpt_chat_jsl_conversational_en (#130)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-04-20-explain_clinical_doc_medication_en (#140)

* Add model 2023-04-20-explain_clinical_doc_medication_en

* Add model 2023-04-20-explain_clinical_doc_radiology_en

* Add model 2023-04-20-explain_clinical_doc_ade_en

* Add model 2023-04-20-explain_clinical_doc_era_en

* Add model 2023-04-20-explain_clinical_doc_carp_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-04-23-summarizer_jsl_radiology_en (#145)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-20-ner_vop_anatomy_wip_en (#139)

* 2023-04-26-ner_profiling_biobert_en (#151)

* 2023-04-27-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#168)

* Update 2023-04-23-summarizer_jsl_radiology_en.md

* 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en (#170)

* Add model 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en

* Add model 2023-04-28-genericclassifier_sdoh_insurance_coverage_sbiobert_cased_mli_en

* Update 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en.md

* Update 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en.md

---------

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>
Co-authored-by: Halil Saglamlar <47859156+hsaglamlar@users.noreply.github.com>

* Add model 2023-05-01-bert_token_classifier_ner_jsl_en (#181)

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-04-28-icd10cm_resolver_pipeline_en (#174)

Co-authored-by: Meryem1425 <vildansarikaya25@gmail.com>

* 2023-04-28-ner_profiling_biobert_en (#171)

* Add model 2023-04-28-ner_profiling_biobert_en

* Add model 2023-04-28-ner_profiling_clinical_en

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Add model 2023-05-02-ner_demographic_extended_en (#187)

Co-authored-by: andrei9825 <andrei@johnsnowlabs.com>

* Add model 2023-05-04-classifier_logreg_ade_en (#194)

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-04-ner_profiling_clinical_en (#196)

* Update 2023-05-04-bert_token_classifier_ner_jsl_en.md

Add benchmark

* fixed typos on 2023-05-04-bert_token_classifier_ner_jsl_en.md

* 2023-05-05-ner_clinical_de (#199)

* 2023-05-04-classifierml_ade_en (#197)

* 2023-05-08-summarizer_clinical_key_facts_en (#201)

* Add model 2023-05-08-summarizer_clinical_key_facts_en

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

changed model name

* Update 2023-05-08-summarizer_clinical_key_facts_en.md

Changed description

---------

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* renamed md file

* 2023-05-09-generic_logreg_classifier_ade_en (#202)

* Add model 2023-05-09-generic_logreg_classifier_ade_en

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

corrected the indentations of the Python codes

* Update 2023-05-09-generic_logreg_classifier_ade_en.md

changed the title

* Add model 2023-05-09-generic_svm_classifier_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>
Co-authored-by: gursev.pirge <67619330+gpirge@users.noreply.github.com>

* Add model 2023-05-08-ner_clinical_de (#200)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Add model 2023-05-11-biogpt_chat_jsl_conditions_en (#204)

Co-authored-by: HashamUlHaq <Haashaamulhaq@gmail.com>

* 2023-05-11-classifier_logreg_ade_en (#209)

* Add model 2023-05-11-classifier_logreg_ade_en

* Add model 2023-05-11-classifierml_ade_en

---------

Co-authored-by: gpirge <gursev.pirge@gmail.com>

* 2023-05-12-ner_abbreviation_emb_clinical_medium_en (#214)

* Add model 2023-05-12-ner_abbreviation_emb_clinical_medium_en

* Add model 2023-05-12-ner_abbreviation_emb_clinical_large_en

* Update 2023-05-12-ner_abbreviation_emb_clinical_medium_en.md

* Update 2023-05-12-ner_abbreviation_emb_clinical_large_en.md

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-11-icd10cm_cause_claim_mapper_en (#210)

* Add model 2023-05-11-icd10cm_cause_claim_mapper_en

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The provided example is updated based on the review. Additional explanation is added for the case where there is no equivalent claim analysis code.

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

* Update 2023-05-11-icd10cm_cause_claim_mapper_en.md

The output results are changed.

---------

Co-authored-by: SKocer <samedkocer22@gmail.com>
Co-authored-by: Samed K <110497137+SKocer@users.noreply.github.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* Add model 2023-05-13-spellcheck_drug_norvig_en (#220)

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-15-ner_anatomy_emb_clinical_medium_en (#225)

* Add model 2023-05-15-ner_anatomy_emb_clinical_medium_en

* Add model 2023-05-15-ner_anatomy_emb_clinical_large_en

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md

* Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-15-biogpt_pubmed_qa_en (#227)

* Add model 2023-05-15-biogpt_pubmed_qa_en

* Update 2023-05-15-biogpt_pubmed_qa_en.md

* Add model 2023-05-15-flan_t5_base_jsl_qa_en

* Update 2023-05-15-flan_t5_base_jsl_qa_en.md

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* Add model 2023-05-17-medical_qa_biogpt_en (#234)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-20-explain_clinical_doc_era_en.md

* Update 2023-04-20-explain_clinical_doc_carp_en.md

* Update 2023-04-28-icd10cm_resolver_pipeline_en.md

* Update 2023-05-08-summarizer_clinical_guidelines_large_en.md

* 2023-05-20-sbiobertresolve_icd10cm_augmented_en (#243)

* Add model 2023-05-20-sbiobertresolve_icd10cm_augmented_en

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

* Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-21-ner_ade_emb_clinical_medium_en (#244)

* Add model 2023-05-21-ner_ade_emb_clinical_medium_en

* Add model 2023-05-21-ner_ade_emb_clinical_large_en

* Add model 2023-05-24-ner_cellular_emb_clinical_medium_en

* Add model 2023-05-24-ner_cellular_emb_clinical_large_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* 2023-05-23-ner_bacterial_species_emb_clinical_medium_en (#252)

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_medium_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Add model 2023-05-23-ner_bacterial_species_emb_clinical_large_en

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md

* Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md

---------

Co-authored-by: gokhanturer <mgturer@gmail.com>
Co-authored-by: Gökhan <81560784+gokhanturer@users.noreply.github.com>

* 2023-05-19-ner_vop_wip_en (#242)

* Add model 2023-05-19-ner_vop_wip_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en

* Add model 2023-05-19-ner_vop_wip_embeddings_clinical_large_en

* Add model 2023-05-19-ner_vop_anatomy_wip_en

* Add model 2023-05-19-ner_vop_clinical_dept_wip_en

* Add model 2023-05-19-ner_vop_demographic_wip_en

* Add model 2023-05-19-ner_vop_problem_reduced_wip_en

* Add model 2023-05-19-ner_vop_problem_wip_en

* Add model 2023-05-19-ner_vop_temporal_wip_en

* Add model 2023-05-19-ner_vop_test_wip_en

* Add model 2023-05-19-ner_vop_treatment_wip_en

* Update 2023-05-19-ner_vop_anatomy_wip_en.md

Fixing wrong special character (").

* Update 2023-05-19-ner_vop_treatment_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_test_wip_en.md

Fixing special character (" to ').

* Update 2023-05-19-ner_vop_temporal_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_problem_reduced_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_demographic_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_clinical_dept_wip_en.md

Adding sample text.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_en.md

Special character fix (" to ').

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changing model name ner_vop_wip_embeddings_clinical_medium to ner_vop_wip_emb_clinical_medium.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changing model name ner_vop_wip_embeddings_clinical_large to ner_vop_wip_emb_clinical_large.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md

Changed s3 link.

* Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md

Changed s3 link.

* Add model 2023-05-24-bert_sequence_classifier_vop_side_effect_en

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

* Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md

Minor edit.

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>
Co-authored-by: mauro-nievoff <55700369+mauro-nievoff@users.noreply.github.com>

* 2023-05-24-sbiobertresolve_icd10cm_generalised_augmented_en (#256)

* 2023-05-29-summarizer_clinical_jsl_pipeline_en (#282)

* 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar (#283)

* Add model 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar

* Update 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar.md

* update md file name

* Add model 2023-05-30-ner_deid_generic_ar

* fixed typos

* fixed typos

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-29-summarizer_clinical_layman_en (#280)

* Add model 2023-05-29-summarizer_clinical_layman_en

* Update 2023-05-29-summarizer_clinical_layman_en.md

* update model name

* Added English names to the example text

---------

Co-authored-by: dcecchini <dadachini@hotmail.com>
Co-authored-by: Cabir ÇELİK <ogr.cabir.celik@ahievran.edu.tr>

* 2023-05-26-icd10cm_billable_hcc_mapper_en (#266)

* Add model 2023-05-26-icd10cm_billable_hcc_mapper_en

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

md file was fixed based on the feedback.

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>
Co-authored-by: muhammetsnts <76607915+muhammetsnts@users.noreply.github.com>

* 2023-05-16-classifier_logreg_ade_en (#232)

* 2023-05-30-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#299)

* 2023-05-30-icd10cm_mapper_en (#295)

* 2023-05-31-sbiobertresolve_hcc_augmented_en (#304)

* Add model 2023-05-31-sbiobertresolve_hcc_augmented_en

* Update 2023-05-31-sbiobertresolve_hcc_augmented_en.md

---------

Co-authored-by: Ahmetemintek <ahmetemin.tek.66@gmail.com>

* 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en (#305)

* Add model 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en

* Add model 2023-05-31-summarizer_radiology_pipeline_en

* Add model 2023-05-31-summarizer_clinical_questions_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Delete 2023-05-31-summarizer_biomedical_pubmed_pipeline_en.md

* Add model 2023-05-31-summarizer_generic_jsl_pipeline_en

* Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_augmented_pipeline_en

* Add model 2023-05-31-summarizer_clinical_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>
Co-authored-by: Damla Gurbaz <81505007+Damla-Gurbaz@users.noreply.github.com>

* 2023-05-31-sbertresolve_icd10cm_slim_billable_hcc_en (#302)

* 2023-05-31-sbertresolve_icd10cm_augmented_en (#306)

* Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>

* 2023-05-31-ner_deid_subentity_pipeline_ar (#313)

* Add model 2023-05-31-ner_deid_subentity_pipeline_ar

* Add model 2023-05-31-ner_deid_generic_pipeline_ar

* Update 2023-05-31-ner_deid_subentity_pipeline_ar.md

---------

Co-authored-by: mellahysf <ysfmell@gmail.com>
Co-authored-by: Cabir C <64752006+Cabir40@users.noreply.github.com>

* 2023-06-02-ner_chemicals_emb_clinical_large_en (#327)

* Add model 2023-06-06-ner_deid_generic_pipeline_ar (#351)

* 2023-06-06-ner_vop_en (#350)

* Add model 2023-06-08-ner_demographic_extended_healthcare_en (#359)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-06-summarizer_clinical_laymen_pipeline_en (#352)

* Add model 2023-06-06-summarizer_clinical_laymen_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-07-bert_token_classifier_ner_jsl_pipeline_en

---------

Co-authored-by: Damla-Gurbaz <dml.grbz.01@gmail.com>

* Add model 2023-06-11-ner_profiling_biobert_en (#362)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-09-ner_vop_pipeline_en (#361)

* Add model 2023-06-09-ner_vop_pipeline_en

* Add model 2023-06-09-ner_vop_anatomy_pipeline_en

* Add model 2023-06-10-ner_vop_clinical_dept_pipeline_en

* Add model 2023-06-10-ner_vop_demographic_pipeline_en

* Add model 2023-06-10-ner_vop_problem_pipeline_en

* Add model 2023-06-10-ner_vop_problem_reduced_pipeline_en

* Add model 2023-06-10-ner_vop_temporal_pipeline_en

* Add model 2023-06-10-ner_vop_test_pipeline_en

* Add model 2023-06-10-ner_vop_treatment_pipeline_en

---------

Co-authored-by: mauro-nievoff <mauro.nievasoffidani@gmail.com>

* Add model 2023-06-13-ner_sdoh_en (#370)

Co-authored-by: hsaglamlar <hsaglamlar@gmail.com>

* Add model 2023-06-13-icd10cm_umls_mapping_en (#373)

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#368)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-explain_clinical_doc_carp_en

* Add model 2023-06-13-explain_clinical_doc_era_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-explain_clinical_doc_medication_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-oncology_general_pipeline_en

* Add model 2023-06-13-oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-13-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-13-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-13-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-13-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-13-ner_oncology_posology_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-13-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-13-ner_clinical_bert_pipeline_ro

* Add model 2023-06-13-ner_clinical_pipeline_ro

* Add model 2023-06-13-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-ner_covid_trials_pipeline_en

* Add model 2023-06-13-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_generic_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-13-ner_deid_subentity_pipeline_ro

* Add model 2023-06-13-ner_living_species_300_pipeline_es

* Add model 2023-06-13-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-13-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-13-ner_oncology_demographics_pipeline_en

* Add model 2023-06-13-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-13-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-13-ner_oncology_test_pipeline_en

* Add model 2023-06-13-ner_oncology_therapy_pipeline_en

* Add model 2023-06-13-ner_oncology_tnm_pipeline_en

* Add model 2023-06-13-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-13-ner_pharmacology_pipeline_es

* Add model 2023-06-13-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-13-ner_deid_generic_pipeline_it

* Add model 2023-06-13-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_it

* Add model 2023-06-13-ner_deid_synthetic_pipeline_en

* Add model 2023-06-13-ner_living_species_bert_pipeline_es

* Add model 2023-06-13-ner_living_species_bert_pipeline_fr

* Add model 2023-06-13-ner_living_species_bert_pipeline_it

* Add model 2023-06-13-ner_living_species_bert_pipeline_pt

* Add model 2023-06-13-ner_living_species_bert_pipeline_ro

* Add model 2023-06-13-ner_living_species_pipeline_ca

* Add model 2023-06-13-ner_living_species_pipeline_en

* Add model 2023-06-13-ner_living_species_pipeline_es

* Add model 2023-06-13-ner_living_species_pipeline_fr

* Add model 2023-06-13-ner_living_species_pipeline_gl

* Add model 2023-06-13-ner_living_species_pipeline_it

* Add model 2023-06-13-ner_living_species_pipeline_pt

* Add model 2023-06-13-ner_living_species_roberta_pipeline_es

* Add model 2023-06-13-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-13-ner_chemd_clinical_pipeline_en

* Add model 2023-06-13-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-13-ner_supplement_clinical_pipeline_en

* Add model 2023-06-13-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-13-ner_diag_proc_pipeline_es

* Add model 2023-06-13-ner_healthcare_pipeline_de

* Add model 2023-06-13-ner_healthcare_slim_pipeline_de

* Add model 2023-06-13-ner_neoplasms_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-13-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-13-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-13-ner_living_species_biobert_pipeline_en

* Add model 2023-06-13-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-13-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-13-bert_token_classifier_ner_ncbi_disease_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-13-ner_profiling_biobert_en (#375)

* Add model 2023-06-13-ner_profiling_biobert_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: C-K-Loan <christian.kasim.loan@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_drug_side_effect_en (#376)

* Add model 2023-06-14-clinical_deidentification_ar (#382)

* 2023-06-13-recognize_entities_posology_en (#378)

* Add model 2023-06-13-recognize_entities_posology_en

* Add model 2023-06-13-snomed_icd10cm_mapping_en

* Add model 2023-06-13-icd10cm_umls_mapping_en

* Add model 2023-06-13-mesh_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_de

* Add model 2023-06-13-clinical_deidentification_es

* Add model 2023-06-13-snomed_umls_mapping_en

* Add model 2023-06-13-rxnorm_umls_mapping_en

* Add model 2023-06-13-clinical_deidentification_glove_en

* Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-13-clinical_deidentification_fr

* Add model 2023-06-13-icd10_icd9_mapping_en

* Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-13-clinical_deidentification_augmented_es

* Add model 2023-06-13-rxnorm_mesh_mapping_en

* Add model 2023-06-13-re_bodypart_directions_pipeline_en

* Add model 2023-06-13-clinical_deidentification_it

* Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-13-re_test_problem_finding_pipeline_en

* Add model 2023-06-13-re_test_result_date_pipeline_en

* Add model 2023-06-13-clinical_deidentification_pt

* Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-13-icd10cm_snomed_mapping_en

* Add model 2023-06-13-icdo_snomed_mapping_en

* Add model 2023-06-13-rxnorm_ndc_mapping_en

* Add model 2023-06-13-clinical_deidentification_ro

* Add model 2023-06-13-clinical_deidentification_slim_en

* Add model 2023-06-13-ner_medication_pipeline_en

* Add model 2023-06-13-snomed_icdo_mapping_en

* Add model 2023-06-13-ner_deid_subentity_pipeline_ar

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en (#380)

* Add model 2023-06-15-ner_profiling_biobert_en (#397)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#399)

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* Add model 2023-06-16-ner_profiling_biobert_en (#400)

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#401)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-clinical_deidentification_fr (#403)

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-16-ner_pharmacology_pipeline_es

* Add model 2023-06-16-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_it

* Add model 2023-06-16-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_it

* Add model 2023-06-16-ner_deid_synthetic_pipeline_en

* Add model 2023-06-16-ner_living_species_bert_pipeline_es

* Add model 2023-06-16-ner_living_species_bert_pipeline_fr

* Add model 2023-06-16-ner_living_species_bert_pipeline_it

* Add model 2023-06-16-ner_living_species_bert_pipeline_pt

* Add model 2023-06-16-ner_living_species_bert_pipeline_ro

* Add model 2023-06-16-ner_living_species_pipeline_ca

* Add model 2023-06-16-ner_living_species_pipeline_en

* Add model 2023-06-16-ner_living_species_pipeline_es

* Add model 2023-06-16-ner_living_species_pipeline_fr

* Add model 2023-06-16-ner_living_species_pipeline_gl

* Add model 2023-06-16-ner_living_species_pipeline_it

* Add model 2023-06-16-ner_living_species_pipeline_pt

* Add model 2023-06-16-ner_living_species_roberta_pipeline_es

* Add model 2023-06-16-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-16-ner_chemd_clinical_pipeline_en

* Add model 2023-06-16-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-16-ner_supplement_clinical_pipeline_en

* Add model 2023-06-16-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-16-ner_diag_proc_pipeline_es

* Add model 2023-06-16-ner_healthcare_pipeline_de

* Add model 2023-06-16-ner_healthcare_slim_pipeline_de

* Add model 2023-06-16-ner_neoplasms_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-16-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-16-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-16-ner_living_species_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-16-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_ar

* Add model 2023-06-16-ner_deid_generic_pipeline_ar

---------

Co-authored-by: ahmedlone127 <ahmedlone127@gmail.com>

* 2023-06-16-ner_profiling_biobert_en (#406)

* Add model 2023-06-16-ner_profiling_biobert_en

* Add model 2023-06-16-clinical_deidentification_en

* Add model 2023-06-16-explain_clinical_doc_carp_en

* Add model 2023-06-16-explain_clinical_doc_era_en

* Add model 2023-06-16-recognize_entities_posology_en

* Add model 2023-06-16-explain_clinical_doc_ade_en

* Add model 2023-06-16-snomed_icd10cm_mapping_en

* Add model 2023-06-16-icd10_icd9_mapping_en

* Add model 2023-06-16-mesh_umls_mapping_en

* Add model 2023-06-16-icd10cm_umls_mapping_en

* Add model 2023-06-16-clinical_deidentification_glove_en

* Add model 2023-06-16-clinical_deidentification_augmented_es

* Add model 2023-06-16-clinical_deidentification_es

* Add model 2023-06-16-clinical_deidentification_fr

* Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en

* Add model 2023-06-16-snomed_umls_mapping_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en

* Add model 2023-06-16-clinical_deidentification_de

* Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-rxnorm_mesh_mapping_en

* Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en

* Add model 2023-06-16-rxnorm_umls_mapping_en

* Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_biobert_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_biobert_pipeline_en

* Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinical_pipeline_en

* Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_pipeline_en

* Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en

* Add model 2023-06-16-ner_anatomy_pipeline_en

* Add model 2023-06-16-ner_bacterial_species_pipeline_en

* Add model 2023-06-16-ner_biomarker_pipeline_en

* Add model 2023-06-16-ner_bionlp_biobert_pipeline_en

* Add model 2023-06-16-ner_bionlp_pipeline_en

* Add model 2023-06-16-ner_cancer_genetics_pipeline_en

* Add model 2023-06-16-ner_cellular_biobert_pipeline_en

* Add model 2023-06-16-ner_cellular_pipeline_en

* Add model 2023-06-16-ner_chemicals_pipeline_en

* Add model 2023-06-16-ner_chemprot_biobert_pipeline_en

* Add model 2023-06-16-ner_chemprot_clinical_pipeline_en

* Add model 2023-06-16-ner_chexpert_pipeline_en

* Add model 2023-06-16-ner_clinical_biobert_pipeline_en

* Add model 2023-06-16-ner_clinical_large_pipeline_en

* Add model 2023-06-16-ner_clinical_pipeline_en

* Add model 2023-06-16-ner_deid_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_deid_enriched_pipeline_en

* Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_generic_pipeline_de

* Add model 2023-06-16-ner_deid_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_large_pipeline_en

* Add model 2023-06-16-ner_deid_sd_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en

* Add model 2023-06-16-ner_deid_subentity_pipeline_de

* Add model 2023-06-16-ner_deidentify_dl_pipeline_en

* Add model 2023-06-16-ner_diseases_biobert_pipeline_en

* Add model 2023-06-16-ner_diseases_large_pipeline_en

* Add model 2023-06-16-ner_diseases_pipeline_en

* Add model 2023-06-16-ner_drugprot_clinical_pipeline_en

* Add model 2023-06-16-ner_drugs_greedy_pipeline_en

* Add model 2023-06-16-ner_drugs_large_pipeline_en

* Add model 2023-06-16-ner_drugs_pipeline_en

* Add model 2023-06-16-ner_events_admission_clinical_pipeline_en

* Add model 2023-06-16-ner_events_biobert_pipeline_en

* Add model 2023-06-16-ner_events_clinical_pipeline_en

* Add model 2023-06-16-ner_genetic_variants_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en

* Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en

* Add model 2023-06-16-ner_jsl_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_enriched_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en

* Add model 2023-06-16-ner_jsl_greedy_pipeline_en

* Add model 2023-06-16-ner_jsl_pipeline_en

* Add model 2023-06-16-ner_jsl_slim_pipeline_en

* Add model 2023-06-16-ner_measurements_clinical_pipeline_en

* Add model 2023-06-16-ner_medmentions_coarse_pipeline_en

* Add model 2023-06-16-ner_nihss_pipeline_en

* Add model 2023-06-16-ner_posology_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_experimental_pipeline_en

* Add model 2023-06-16-ner_posology_greedy_pipeline_en

* Add model 2023-06-16-ner_posology_large_biobert_pipeline_en

* Add model 2023-06-16-ner_posology_large_pipeline_en

* Add model 2023-06-16-ner_posology_pipeline_en

* Add model 2023-06-16-ner_posology_small_pipeline_en

* Add model 2023-06-16-ner_radiology_pipeline_en

* Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en

* Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en

* Add model 2023-06-16-ner_risk_factors_pipeline_en

* Add model 2023-06-16-clinical_deidentification_glove_augmented_en

* Add model 2023-06-16-ner_ade_healthcare_pipeline_en

* Add model 2023-06-16-ner_healthcare_pipeline_en

* Add model 2023-06-16-ner_posology_healthcare_pipeline_en

* Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en

* Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en

* Add model 2023-06-16-ner_events_healthcare_pipeline_en

* Add model 2023-06-16-clinical_deidentification_it

* Add model 2023-06-16-explain_clinical_doc_radiology_en

* Add model 2023-06-16-re_bodypart_directions_pipeline_en

* Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en

* Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_clinical_pipeline_en

* Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en

* Add model 2023-06-16-re_test_problem_finding_pipeline_en

* Add model 2023-06-16-re_test_result_date_pipeline_en

* Add model 2023-06-16-explain_clinical_doc_medication_en

* Add model 2023-06-16-spellcheck_clinical_pipeline_en

* Add model 2023-06-16-clinical_deidentification_pt

* Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en

* Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-16-icd10cm_snomed_mapping_en

* Add model 2023-06-16-icdo_snomed_mapping_en

* Add model 2023-06-16-rxnorm_ndc_mapping_en

* Add model 2023-06-16-clinical_deidentification_ro

* Add model 2023-06-16-snomed_icdo_mapping_en

* Add model 2023-06-16-ner_pathogen_pipeline_en

* Add model 2023-06-16-clinical_deidentification_wip_en

* Add model 2023-06-16-clinical_deidentification_slim_en

* Add model 2023-06-16-ner_medication_pipeline_en

* Add model 2023-06-16-oncology_general_pipeline_en

* Add model 2023-06-16-oncology_biomarker_pipeline_en

* Add model 2023-06-16-oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_en

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu

* Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr

* Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it

* Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en

* Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en

* Add model 2023-06-16-ner_oncology_posology_pipeline_en

* Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en

* Add model 2023-06-16-ner_sdoh_mentions_pipeline_en

* Add model 2023-06-16-ner_clinical_bert_pipeline_ro

* Add model 2023-06-16-ner_clinical_pipeline_ro

* Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-16-ner_covid_trials_pipeline_en

* Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_generic_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro

* Add model 2023-06-16-ner_deid_subentity_pipeline_ro

* Add model 2023-06-16-ner_living_species_300_pipeline_es

* Add model 2023-06-16-ner_negation_uncertainty_pipeline_es

* Add model 2023-06-16-ner_oncology_biomarker_pipeline_en

* Add model 2023-06-16-ner_oncology_demographics_pipeline_en

* Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en

* Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en

* Add model 2023-06-16-ner_oncology_test_pipeline_en

* Add model 2023-06-16-ner_oncology_therapy_pipeline_en

* Add model 2023-06-16-ner_oncology_tnm_pipeline_en

* Add model 2023-06-17-ner_oncology_unspecific_posology_pipeline_en

* Add model 2023-06-17-ner_pharmacology_pipeline_es

* Add model 2023-06-17-ner_deid_generic_glove_pipeline_en

* Add model 2023-06-17-ner_deid_generic_pipeline_it

* Add model 2023-06-17-ner_deid_subentity_glove_pipeline_en

* Add model 2023-06-17-ner_deid_subentity_pipeline_it

* Add model 2023-06-17-ner_deid_synthetic_pipeline_en

* Add model 2023-06-17-ner_living_species_bert_pipeline_es

* Add model 2023-06-17-ner_living_species_bert_pipeline_fr

* Add model 2023-06-17-ner_living_species_bert_pipeline_pt

* Add model 2023-06-17-ner_living_species_bert_pipeline_ro

* Add model 2023-06-17-ner_living_species_bert_pipeline_it

* Add model 2023-06-17-ner_living_species_pipeline_ca

* Add model 2023-06-17-ner_living_species_pipeline_en

* Add model 2023-06-17-ner_living_species_pipeline_es

* Add model 2023-06-17-ner_living_species_pipeline_fr

* Add model 2023-06-17-ner_living_species_pipeline_gl

* Add model 2023-06-17-ner_living_species_pipeline_it

* Add model 2023-06-17-ner_living_species_pipeline_pt

* Add model 2023-06-17-ner_living_species_roberta_pipeline_es

* Add model 2023-06-17-ner_living_species_roberta_pipeline_pt

* Add model 2023-06-17-ner_chemd_clinical_pipeline_en

* Add model 2023-06-17-ner_nature_nero_clinical_pipeline_en

* Add model 2023-06-17-ner_supplement_clinical_pipeline_en

* Add model 2023-06-17-nerdl_tumour_demo_pipeline_en

* Add model 2023-06-17-ner_diag_proc_pipeline_es

* Add model 2023-06-17-ner_healthcare_pipeline_de

* Add model 2023-06-17-ner_healthcare_slim_pipeline_de

* Add model 2023-06-17-ner_neoplasms_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ade_tweet_binary_pipeline_en

* Add model 2023-06-17-bert_token_classifier_disease_mentions_tweet_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_ade_binary_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_anatem_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc2gm_gene_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc5cdr_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-17-bert_token_classifier_ner_jnlpba_cellular_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_linnaeus_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-17-ner_deid_generic_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en

* Add model 2023-06-17-ner_deid_subentity_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_negation_uncertainty_pipeline_es

* Add model 2023-06-17-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es

* Add model 2023-06-17-ner_living_species_biobert_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_it

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_pt

* Add model 2023-06-17-bert_token_classifier_ner_ncbi_disease_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_pathogen_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_species_pipeline_en

* Add model 2023-06-17-bert_token_classifier_pharmacology_pipeline_es

* Add model 2023-06-17-ner_living_species_biobert_pipeline_en

* Add model 2023-06-17-ner_deid_generic_pipeline_ar

* Add model 2023-06-17-ner_deid_subentity_pipeline_ar

* Add model 2023-06-17-bert_token_classifier_ner_living_species_pipeline_es

---------

Co-authored-by: Cabir40 <cabir4006@gmail.com>

* 2023-06-17-ner_profiling_biobert_en (#408)

* Add model 2023-06-17-ner_profiling_biobert_en

* Add model 2023-06-17-clinical_deidentification_en

* Add model 2023-06-17-explain_clinical_doc_carp_en

* Add model 2023-06-17-explain_clinical_doc_era_en

* Add model 2023-06-17-recognize_entities_posology_en

* Add model 2023-06-17-snomed_icd10cm_mapping_en

* Add model 2023-06-17-clinical_deidentification_glove_en

* Add model 2023-06-17-icd10cm_umls_mapping_en

* Add model 2023-06-17-icd10_icd9_mapping_en

* Add model 2023-06-17-mesh_umls_mapping_en

* Add model 2023-06-17-clinical_deidentification_es

* Add model 2023-06-17-rxnorm_mesh_mapping_en

* Add model 2023-06-17-clinical_deidentification_augmented_es

* Add model 2023-06-17-clinical_deidentification_fr

* Add model 2023-06-17-bert_token_classifier_ner_chemicals_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_clinical_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_anatomy_pipeline_en

* Add model 2023-06-17-bert_token_classifier_ner_bacteria_pipeline_en

* Add model 2023-06-17-explain_clinical_doc_ade_en

* Add model 2023-06-17-clinical_deidentification_de

* Add model 2023-06-17-bert_token_classifier_ner_cellular_pipeline_en

* …
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@Cabir40 Cabir40 Cabir40 approved these changes

Assignees

@vkocaman vkocaman

Labels
new model
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

None yet
4 participants
@jsl-models @Cabir40 @vkocaman @mauro-nievoff