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Random seed #106

Merged
merged 4 commits into from Jul 3, 2018
Merged

Random seed #106

merged 4 commits into from Jul 3, 2018

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adamgayoso
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@adamgayoso adamgayoso commented Jun 21, 2018

  • Adds random_state parameter which controls synthetic doublet creation, PCA, as well as PCA and TSNE in .plot
  • Updates thresholds in PBMC8k notebook

JonathanShor and others added 3 commits June 21, 2018 12:16
If provided, specifies a value to seed the numpy RNG used in synthetic creation, and the RNG used in randomized PCA dimension reduction.
the analysis didn't show much. removing for now
@adamgayoso adamgayoso merged commit bcd24cc into dev-v2.4 Jul 3, 2018
@adamgayoso adamgayoso deleted the random-seed branch July 3, 2018 16:59
@adamgayoso adamgayoso mentioned this pull request Jul 3, 2018
JonathanShor pushed a commit that referenced this pull request Jul 17, 2018
- Adds random state parameter for PCA, tSNE, synthetic doublet creation in BoostClassifer - closes #106
- Adds random state parameter for PCA, tSNE in tsne plot
- tsne plot returns PhenoGraph communities - closes #109
- tsne plot accepts array-like through sklearn check array - closes #104
- improves readability of threshold plot - closes #102
- notebook uses voter threshold of 0.8 (non-default)
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2 participants