add EEG seizure dataset and conversion script #6
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Datseris
reviewed
Jan 13, 2023
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@Datseris I have now included 4 EEG time series, downsampled to 4 Hz. The file is now 8.5MB, this should be okay? |
Datseris
reviewed
Jan 13, 2023
Datseris
reviewed
Jan 13, 2023
exercise_data/data_explanations.md
Outdated
| @@ -14,4 +14,5 @@ | |||
| 14 = Dataset 93 of https://webdav.tuebingen.mpg.de/cause-effect/ (citation = J. M. Mooij, J. Peters, D. Janzing, J. Zscheischler, B. Schoelkopf: "Distinguishing cause from effect using observational data: methods and benchmarks"). First column of data is average precipitation over 1948 to 2004 in mm/day, second is average runoff | |||
| 15 = Same as 14, but dataset 73: first column is CO2 emissions, second column is energy use (kg of oil equivalent) | |||
| 16 = Long-time simulation data for orbital parameters of Earth, from http://vo.imcce.fr/insola/earth/online/earth/online/index.php with DOI: 10.1051/0004-6361:20041335. The data (each column) are: time (1000yr), eccentricity, climatic precession, obliquity (radians), insolation (W/m^2). Latitude is 65, record at day of summer solstice (21 June, true longitude = 90). | |||
| 17 = Vostok Ice Core Data for 420,000 Years. First column is time in years (increasing towards the past), second column is estimated temperature difference w.r.t. current day temperature. Notice that the data are not equi-temporally sampled. The data were downloaded from https://www.ncdc.noaa.gov/paleo-search/ with suggested data citation: "Petit, J.R., et al., 2001, Vostok Ice Core Data for 420,000 Years, IGBP PAGES/World Data Center for Paleoclimatology Data Contribution Series #2001-076. NOAA/NGDC Paleoclimatology Program, Boulder CO, USA." and see https://doi.org/10.1038/20859 | |||
| 17 = Vostok Ice Core Data for 420,000 Years. First column is time in years (increasing towards the past), second column is estimated temperature difference w.r.t. current day temperature. Notice that the data are not equi-temporally sampled. The data were downloaded from https://www.ncdc.noaa.gov/paleo-search/ with suggested data citation: "Petit, J.R., et al., 2001, Vostok Ice Core Data for 420,000 Years, IGBP PAGES/World Data Center for Paleoclimatology Data Contribution Series #2001-076. NOAA/NGDC Paleoclimatology Program, Boulder CO, USA." and see https://doi.org/10.1038/20859 | |||
| 18 = EEG recordings of a patient from the Siena Scalp EEG Database. Each Column is one EEG signal at electrode F8 (right frontal region, patient has right-hemisphere seizures) from patient 0, downsampled to 64Hz. The seizures in the recordings are documented to have started at t=[1143.0s, 1220.0s, 1006.0s, 904.0s] and ended at t=[1213.0s, 1274.0s, 1080.0s, 971.0s], respectively. These time series were downloaded from https://physionet.org/files/siena-scalp-eeg/1.0.0/PN00/PN00-1.edf and converted into the csv format using convert_18.py | |||
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Are these times that you document here the times of the real data, of the subsampled data? Isn't it simpler to give row indices as the start and end?
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Hi there!
I have added
18.csvcontaining an EEG recording of a patient with a seizure [1, 2], available fromphysionet[3].For completeness, I have also added the
pythonscript I used to convert it from the.edfformat to.csv.Why did I use a python script? Because I found no
Juliapackage to read.edffilesand using
pyedflibviaPythonCalldoesn't work very nicely atm. Thepythonfile includes some further info about the dataset.References
[1] Detti, P. (2020). Siena Scalp EEG Database (version 1.0.0). PhysioNet. https://doi.org/10.13026/5d4a-j060.
[2] Detti, Paolo, Giampaolo Vatti, and Garazi Zabalo Manrique de Lara. “EEG Synchronization Analysis for Seizure Prediction: A Study on Data of Noninvasive Recordings.” Processes 8, no. 7 (July 16, 2020): 846. https://doi.org/10.3390/pr8070846.
[3] Goldberger, A., Amaral, L., Glass, L., Hausdorff, J., Ivanov, P. C., Mark, R., ... & Stanley, H. E. (2000). PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals. Circulation [Online]. 101 (23), pp. e215–e220.