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Tag New Release v2.0.0 #33

Merged
merged 60 commits into from
Oct 24, 2022
Merged

Tag New Release v2.0.0 #33

merged 60 commits into from
Oct 24, 2022

Commits on Jul 29, 2022

  1. Removed type signatures + fixed docstrings; lowercased table names an…

    …d columns in prep for OMOPCDM
    TheCedarPrince committed Jul 29, 2022
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Commits on Aug 3, 2022

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  3. Changed docstring in StateFilterPersonIDs and enforced uppercasing fo…

    …r state abbreviations; added exports
    TheCedarPrince committed Aug 3, 2022
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Commits on Aug 5, 2022

  1. Merge branch 'dev'

    TheCedarPrince committed Aug 5, 2022
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Commits on Aug 7, 2022

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  6. Added helpers file

    TheCedarPrince committed Aug 7, 2022
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Commits on Aug 8, 2022

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  10. Modified footer

    TheCedarPrince committed Aug 8, 2022
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  11. Updated landing page

    TheCedarPrince committed Aug 8, 2022
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Commits on Sep 13, 2022

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Commits on Sep 14, 2022

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Commits on Sep 21, 2022

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Commits on Oct 12, 2022

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  3. Initial Tests for Getters, Filters, and Executors (#24)

    * Version 0.1.0 Release (#4)
    
    * Removed type signatures + fixed docstrings; lowercased table names and columns in prep for OMOPCDM
    
    * Added TODO's for what tests to write
    
    * Removed type signatures and added TODO for futures
    
    * Removed type signatures
    
    * Removed type signatures
    
    * Raised proposal to CDM maintainers and am awaiting feedback before moving forward on this
    
    * Removed type signatures and fixed bug with GetPatientVisits to correctly return patient visits
    
    * Changed docstring in StateFilterPersonIDs and enforced uppercasing for state abbreviations; added exports
    
    * Added and updated CHANGELOG
    
    * Bumped project version numbers for new release
    
    * Removed as it was an early testing prototype file
    
    * Began revising tutorial documentation
    
    * Removed Manifest file for package
    
    * Added Dates and TimeZones deps for managing age groups
    
    * Disallowed some exports and created new function for generating defaults
    
    * Added new deps Dates and TimeZones for time management
    
    * Began refactoring of GetPatientAgeGroup
    
    * Refactored GetPatientAgeGroup to correctly get age group of patients
    
    * Removed AgeGroupFilter in favor of supporting GetPatientAgeGroup and fixed docstrings
    
    * Added SampleData compat and dependency
    
    * Renamed files and fixed docs
    
    * Fixed documentation and fixed methods for calculating age
    
    * Added helper function to determine year
    
    * Started adding first batch of tests
    
    * Added helpers file
    
    * Removed entry for SampleHealthData until merge of package occurs
    
    * Converted this function to internal helper function
    
    * Added new tests and dependencies
    
    * Added tests for GetPatientGender, GetPatientAgeGroup, GetPatientRace, and GetDatabasePersonIDs
    
    * Added ignore for various Julia artifacts
    
    * Initial drafting of full tutorial
    
    * Finished initial beginner tutorial
    
    * Updated README with badges and documentation link
    
    * Modified footer
    
    * Updated landing page
    
    * Reordered pages on sidebar
    
    * Added todo action to automatically create todos
    
    * Added todos for issues in getters
    
    * Removed dependency on HealthSampleData and compat entries
    
    * Added todosfor multiple tests that need to be created
    
    * Uncommented test sets for running and added todo for Generators
    
    * Created test for GetPatientVisits()
    
    * Created Test for ExecuteAudit()
    
    * Created test for GetMostRecentVisit
    
    * updated tests
    
    * started creating test for GetVisitCondition
    
    * Changed GetVisitCondition Test
    
    * created test for VisitFilterPersonIDs
    
    * Added test for filters.jl
    
    * Finished tests for filters
    
    * Added a test step for code coverage
    
    * Removed VSCode configurations
    
    * Bumped compat entry for HealthSampleData
    
    * Removed todos and fixed GenderFilterPersonIDs test
    
    * Removed unnecessary comments
    
    * For allowing HealthSampleData to always download sample data
    
    * Test with adding latest codecoverage version
    
    * Added code coverage badge icon
    
    Co-authored-by: TheCedarPrince <jacobszelko@gmail.com>
    Co-authored-by: Chinta <vchinta6@icl.gtri.org>
    3 people committed Oct 12, 2022
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Commits on Oct 18, 2022

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Commits on Oct 19, 2022

  1. Simplify Age Calculations (#27)

    * Added SQL generation for filter statements
    
    * Removed option for internal DB calculation
    
    * Fixed GetPatientAgeGroup and added GetDatabaseYearRange and updated docstrings
    
    * Updated test suite
    
    * Removed old tests for GetPatientAgeGroup
    TheCedarPrince committed Oct 19, 2022
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Commits on Oct 23, 2022

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  2. Added Additional Test Coverage for Getters and Helpers (#28)

    * Updated docstrings for SQL rendering
    
    * Updated docstrings, formatting, and enforced String returns for SQL dispatches
    
    * Updated test explanation
    
    * Added test suite for GetMostRecentConditions and formatted
    TheCedarPrince committed Oct 23, 2022
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  3. Fix to Docs Deployment (#29)

    * Testing fix for docs deployment
    
    * Expected the OMOPCDMCohortCreator package to be available
    
    * Added push preview information and the edit link
    
    * Fixed deprecation warning
    
    * Final layout fixes to collapselevel
    
    * Final fix
    TheCedarPrince committed Oct 23, 2022
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  4. Update to Beginner Tutorial and Minor Refactor of Tutorials Layout (#30)

    * Configured nesting of tutorial
    
    * Updated landing page description
    
    * Broke up tutorial pages
    
    * Added revamped beginner tutorial
    TheCedarPrince committed Oct 23, 2022
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Commits on Oct 24, 2022

  1. Overhaul of Docs (#31)

    * Moved beginner tutorial
    
    * Added tutorial for R usage
    
    * Updated index of tutorials
    
    * Fixed up tutorials index
    
    * Renamed R tutorial
    
    * Clarified links for tutorials
    
    * Julia on the brain
    
    * Added contributing guide
    
    * Added contributing guide
    
    * Updated API exports
    
    * Revamped overview of package
    
    * Added the most necessary of all things: emojis ✨
    
    * Fixed up emojis
    
    * Fixed up API table of contents
    
    * Fixed emojis
    
    * Updated main features of package
    
    * Removed emoji
    TheCedarPrince committed Oct 24, 2022
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  3. Tagged new release

    TheCedarPrince committed Oct 24, 2022
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