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print out status update to stderr to capture of parameter result #38

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merged 1 commit into from
Jun 15, 2019

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hyphaltip
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The tutorial has these examples:

L=$(smudgeplot cutoff kmer_k21.hist L)
U=$(smudgeplot cutoff kmer_k21.hist U)

to capture result/computed params for L & U, but the current code reports things like version number and status updates (eg Done!) so make sure we only return the value on stdout I suggest these changes to print messages regarding running to stderr and keep the reported data to stdout.

@KamilSJaron
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KamilSJaron commented Jun 15, 2019

Hello, well spotted.

I planned to print all the progress on stderr, it was just laziness when I was putting the central script together and then I forgot to fix it later on. Thanks for this!

@KamilSJaron KamilSJaron merged commit 0813a69 into KamilSJaron:master Jun 15, 2019
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2 participants