@KarrLab

Karr whole-cell modeling lab

Developing whole-cell computational models to predict and engineer biology.

  • A Next.js application for supporting Datanator

    JavaScript MIT Updated Oct 15, 2018
  • Whole-cell modeling tutorials

    Python 5 1 MIT Updated Oct 15, 2018
  • Framework for systematically and scalably designing whole-cell models from large datasets

    Python MIT Updated Oct 15, 2018
  • Rule-based modeling for whole-cell models.

    Python 1 MIT Updated Oct 15, 2018
  • Database-independent Django-like object schema

    Python MIT Updated Oct 12, 2018
  • Toolkit for discovering and aggregating data for whole-cell modeling

    Python 2 MIT Updated Oct 12, 2018
  • Tools for building databases of experimental data for constructing whole-cell models

    Python MIT Updated Oct 10, 2018
  • Tools for managing computing environments for WC modeling

    Python MIT Updated Oct 3, 2018
  • Utilities for testing Python code and its downstream dependencies, submitting coverage reports, conducting static analyses, and generating documenation

    Python MIT Updated Oct 1, 2018
  • Whole-cell models and whole-cell modeling tools

    Python MIT Updated Oct 1, 2018
  • Utilities for packaging Python code

    Python MIT Updated Oct 1, 2018
  • Framework for testing whole-cell knowledge bases and models

    Python MIT Updated Oct 1, 2018
  • A draft modular, mult-algorithmic, discrete event WC simulator. CellState, SSA and FBA are simulation objects.

    Python 1 MIT Updated Oct 1, 2018
  • Schema for reaction network descriptions of whole-cell models

    Python 1 MIT Updated Oct 1, 2018
  • Framework for constructing knowledge bases for whole-cell models

    Python MIT Updated Oct 1, 2018
  • Tools for analyzing whole-cell knowledge bases, models, and simulation results

    Python MIT Updated Oct 1, 2018
  • Python interface for UnitTH unit test history report generator

    Python 2 MIT Updated Oct 1, 2018
  • Generate random whole-cell models

    Python MIT Updated Oct 1, 2018
  • Convert nose-style test reports to UnitTH-style test reports

    Python MIT Updated Oct 1, 2018
  • Python package for linear and quadratic programming

    Python 3 MIT Updated Oct 1, 2018
  • Code for the Karr Lab's code website

    PHP MIT Updated Oct 1, 2018
  • Instructions to build docker image for wc_rules

    Dockerfile MIT Updated Oct 1, 2018
  • Command line programs to save Google documents to text and LaTeX files

    Python 1 MIT Updated Sep 29, 2018
  • Whole-cell modeling utilities such as debug logging, data logging, plotting, and random number generation

    Python MIT Updated Sep 29, 2018
  • Code for the Karr Lab website

    HTML MIT Updated Sep 21, 2018
  • Code for the Karr Lab data website

    CSS Updated Sep 21, 2018
  • Code for the Karr Lab docs website

    PHP MIT Updated Sep 21, 2018
  • Python Updated Sep 17, 2018
  • Sphinx extension that enables addition of user-defined HTML to docs

    Python 1 BSD-2-Clause Updated Sep 17, 2018
  • Unit test history report server

    JavaScript MIT Updated Aug 21, 2018
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