Whole-cell modeling utilities
This package contains utilities that are useful to multiple whole-cell (WC) software components.
Install the third-party dependencies listed below. Detailed installation instructions are available in An Introduction to Whole-Cell Modeling.
To use Marvin to calculate major protonation states, set
JAVA_HOMEto the path to your Java virtual machine (JVM)
To use Marvin to calculate major protonation states, add Marvin to the Java class path
Install this package
Install the latest release from PyPI
pip install wc_utils[all]
Install the latest revision from GitHub
pip install git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils[all] pip install git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils[all]
Please see the API documentation.
The build utilities are released under the MIT license.
This package was developed by the Karr Lab at the Icahn School of Medicine at Mount Sinai in New York, USA.
- Arthur Goldberg
- Jonathan Karr
Questions and comments
Please contact the Karr Lab with any questions or comments.