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Conversion to a Flask Backend API application #4

Merged
merged 43 commits into from Aug 17, 2018
Merged

Conversion to a Flask Backend API application #4

merged 43 commits into from Aug 17, 2018

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saapooch
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Updating kinetic datanator to convert

Merge includes:

  • Conversion of the Common Schema database into a Postgres Database
  • Improved full text searching using SQLalchemy_searchable/TSVectors through postgres engine
  • Including Flask_Script manager to run application and API
  • Preliminary API views and endpoints including full text search endpoint and metabolite concentration endpoint
  • Marshmallow serializers for API JSON responses
  • Data managers for getting data from common schema database in an organized fashion

saapooch and others added 26 commits July 30, 2018 11:32
@saapooch
get api up and running
9b1933c
@saapooch
change name to commonschema
671295b
@saapooch
get postgres engine beginning to work
4468e07
@saapooch
update new common schema to be fully postgres compatible
46dd970
@saapooch
update dumping procedure
d43bd8d
@saapooch
add time it function for the rest of the modules
25bd654
@saapooch
remove existing backups and include dump functionality
539f38e
@saapooch
include search vectors for full text search
4cd4a2b
@saapooch
fix text search
bd6e267
@saapooch
clean up timing on common schema
42b59a8
@saapooch
clean up constants
7d06e5c
@saapooch
update circle to allow testing with postgres
a7a0e60
@saapooch
fix postgres circle issue
1b6d45a
@saapooch
get rid of ssl requirement
1831326
@saapooch
fix upload download CS dumps
05607ff
@saapooch
include api documentation and formatting
b94ca92
@saapooch
include error pages
9571aef
@saapooch
api infrastructure commits
b111d63
@saapooch
restore molecule util
30f721f
@saapooch
create managers for all entities
782c65d
@saapooch
push metabolite and search manager
600f084
@jonrkarr
debugging order of execution of app creation; adding marshmallow-sqla…
fcc44b0 
…lchemy requirement
@saapooch
fix app issue with circular imports
ae2d1cf
@saapooch
update requirements
6084d67
@saapooch
include new serializers
d4442c5
@saapooch
Merge remote-tracking branch 'origin/master' into backend
82f9639
@saapooch saapooch self-assigned this Aug 15, 2018
@saapooch saapooch merged commit 0551b07 into master Aug 17, 2018
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@saapooch @jonrkarr