get_all_kegg starts with distance of 1

KarrLab · Mar 12, 2020 · 856433c · 856433c
1 parent 48b58f1
commit 856433c
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/datanator_query_python/query/query_protein.py b/datanator_query_python/query/query_protein.py
@@ -824,7 +824,7 @@ def get_all_kegg(self, ko, anchor, max_distance):
 
         result = []
         for i in range(max_distance):
-            result.append({'distance': i , 'documents': []})
+            result.append({'distance': i + 1, 'documents': []})
 
         projection = {
             'ko_number': 1,
@@ -850,5 +850,5 @@ def get_all_kegg(self, ko, anchor, max_distance):
             if distance != -1 and distance <= max_distance:
                 species_canon_ancestor = obj[species+'_canon_ancestors']
                 doc['canon_ancestors'] = species_canon_ancestor
-                result[distance-1]['documents'].append(doc)
+                result[distance]['documents'].append(doc)
         return result
diff --git a/datanator_query_python/query/query_taxon_tree.py b/datanator_query_python/query/query_taxon_tree.py
@@ -350,7 +350,7 @@ def get_canon_common_ancestor(self, org1, org2, org_format='tax_id'):
                 (:obj:`Obj`)
         '''
         if org1 is None or org2 is None:
-            return {str(org1): -1, str(org2): -1, 'reason': 'Needs two organisms.'}
+            return {'reason': 'Needs two organisms.'}
 
         # if org1 == org2:
         #     return (org1, [0, 0])