updating for pip 19

KarrLab · Mar 13, 2019 · 73513cd · 73513cd
1 parent d006a8c
commit 73513cd
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Showing 5 changed files with 29 additions and 18 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -16,22 +16,26 @@ jobs:
       # Python 3 installation tasks
       - run:
           name: Install pkg_utils (Python 3)
-          command: pip3 install -U --process-dependency-links git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils
+          command: pip3 install -U git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils
       - run:
           name: Install karr_lab_build_utils (Python 3)
-          command: pip3 install -U --process-dependency-links git+https://github.com/KarrLab/karr_lab_build_utils.git#egg=karr_lab_build_utils[all]
+          command: |
+            pip3 install -U git+https://github.com/KarrLab/log.git#egg=log
+            pip3 install -U git+https://github.com/KarrLab/sphinxcontrib-googleanalytics.git#egg=sphinxcontrib_googleanalytics
+            pip3 install -U git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils[all]
+            pip3 install -U git+https://github.com/KarrLab/karr_lab_build_utils.git#egg=karr_lab_build_utils[all]
       - run:
           name: Install package configuration files including credentials
           command: karr_lab_build_utils3 download-install-package-config-files
       - run:
-          name: Install and upgrade requirements (Python 3)
+          name: Setup Python environment
           command: |
-            set +e
-            karr_lab_build_utils3 install-requirements
-            karr_lab_build_utils3 upgrade-karr-lab-packages
+            if [[ -f .circleci/requirements.txt ]]; then
+              pip3 install -U -r .circleci/requirements.txt
+            fi
       - run:
           name: Install package (Python 3)
-          command: pip3 install -U --process-dependency-links -e .[all]
+          command: pip3 install -U -e .[all]
 
       # Save packages to cache
       - save_cache:

diff --git a/README.md b/README.md
@@ -39,9 +39,16 @@ The first time `gdoc_down` is called, `gdoc_down` will request access to the use
 account. This will create a client.json file in the users home directory (~/.gdoc_down/client.json).
 
 ## Installation
-```
-pip install gdoc_down
-```
+
+* Latest release from PyPI
+  ```
+  pip install gdoc_down
+  ```
+
+* Latest revision from GitHub
+  ```
+  pip install git+https://github.com/KarrLab/gdoc_down.git#egg=gdoc_down
+  ```
 
 ## Command line usage
 ```

diff --git a/docs/installation.rst b/docs/installation.rst
@@ -7,14 +7,14 @@ Prerequisites
 * Python
 * Pip
 
-Latest revision from GitHub
----------------------------
-Run the following command to install the latest version from GitHub::
-
-    pip install git+git://github.com/KarrLab/gdoc_down.git#egg=gdoc_down
-
 Latest release From PyPI
 ---------------------------
 Run the following command to install the latest release from PyPI::
 
     pip install gdoc_down
+
+Latest revision from GitHub
+---------------------------
+Run the following command to install the latest version from GitHub::
+
+    pip install git+https://github.com/KarrLab/gdoc_down.git#gdoc_down
diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -2,6 +2,6 @@ sphinx >= 1.8
 sphinx_rtd_theme >= 0.4.2
 sphinxcontrib_addmetahtml >= 0.1.1
 sphinxcontrib_bibtex
-git+https://github.com/KarrLab/sphinxcontrib-googleanalytics.git#egg=sphinxcontrib_googleanalytics-0.1.1 >= 0.1.1
+sphinxcontrib_googleanalytics >= 0.1.1
 sphinxcontrib_spelling
 sphinxprettysearchresults
diff --git a/setup.py b/setup.py
@@ -3,7 +3,7 @@
     import pkg_utils
 except ImportError:
     import pip._internal
-    pip._internal.main(['install', '--process-dependency-links', 'git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils'])
+    pip._internal.main(['install', 'pkg_utils'])
     import pkg_utils
 import os