supporting dependency links

KarrLab · Dec 14, 2017 · 6c8fa3d · 6c8fa3d
1 parent 294c35a
commit 6c8fa3d
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Showing 4 changed files with 20 additions and 20 deletions.
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -13,15 +13,15 @@ jobs:
             - cache-v8-{{ .Branch }}-
             - cache-v8-
 
-      - run: pip2 install -U git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils
-      - run: pip2 install -U git+https://github.com/KarrLab/karr_lab_build_utils.git#egg=karr_lab_build_utils
+      - run: pip2 install -U --process-dependency-links git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils
+      - run: pip2 install -U --process-dependency-links git+https://github.com/KarrLab/karr_lab_build_utils.git#egg=karr_lab_build_utils
       - run: karr_lab_build_utils2 install-requirements
-      - run: pip2 install -U -e .[all]
+      - run: pip2 install -U --process-dependency-links -e .[all]
 
-      - run: pip3 install -U git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils
-      - run: pip3 install -U git+https://github.com/KarrLab/karr_lab_build_utils.git#egg=karr_lab_build_utils
+      - run: pip3 install -U --process-dependency-links git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils
+      - run: pip3 install -U --process-dependency-links git+https://github.com/KarrLab/karr_lab_build_utils.git#egg=karr_lab_build_utils
       - run: karr_lab_build_utils3 install-requirements
-      - run: pip3 install -U -e .[all]
+      - run: pip3 install -U --process-dependency-links -e .[all]
 
       - save_cache:
           key: cache-v8-{{ .Branch }}-{{ checksum "requirements.txt" }}

diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -15,5 +15,5 @@ sphinxcontrib_bibtex
 sphinxcontrib_spelling
 sqlalchemy
 sympy
-# git+https://github.com/KarrLab/wc_lang.git#egg=wc_lang  # wc modeling language
-git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils  # wc modeling utilities
+# git+https://github.com/KarrLab/wc_lang.git#egg=wc_lang-0.0.1  # wc modeling language
+git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils-0.0.1a5  # wc modeling utilities
diff --git a/requirements.txt b/requirements.txt
@@ -1,13 +1,13 @@
-cement                                                   # framework for building command line programs
+cement                                                           # framework for building command line programs
 cobra >= 0.8.2
-ipython                                                  # interactive interpret
-matplotlib                                               # plotting
-numpy                                                    # numerical computing
+ipython                                                          # interactive interpret
+matplotlib                                                       # plotting
+numpy                                                            # numerical computing
 openpyxl
-optlang                                                  # numerical optimization
-# pgmpy                                                  # graphical models package
-# scikit_learn                                           # data science package
-scipy                                                    # scientific computing
-sqlalchemy                                               # relational databases
-git+https://github.com/KarrLab/wc_lang.git#egg=wc_lang   # wc modeling language
-git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils # wc modeling utilities
+optlang                                                          # numerical optimization
+# pgmpy                                                          # graphical models package
+# scikit_learn                                                   # data science package
+scipy                                                            # scientific computing
+sqlalchemy                                                       # relational databases
+git+https://github.com/KarrLab/wc_lang.git#egg=wc_lang-0.0.1     # wc modeling language
+git+https://github.com/KarrLab/wc_utils.git#egg=wc_utils-0.0.1a5 # wc modeling utilities
diff --git a/setup.py b/setup.py
@@ -3,7 +3,7 @@
     import pkg_utils
 except ImportError:
     import pip
-    pip.main(['install', 'git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils'])
+    pip.main(['install', '--process-dependency-links', 'git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils'])
     import pkg_utils
 import os