adding circle config

circle.yml

@@ -0,0 +1,111 @@
+machine:
+  python:
+    version: 2.7.11
+dependencies:
+  cache_directories:
+    - ~/lib
+  pre:
+    # requirements for package
+    - |
+        sudo apt-get install \
+          lftp \
+          libglpk-dev
+    - pip install -r requirements.txt
+
+    # requirements for testing and documentation
+    - |
+        mkdir -p ~/lib
+        if [ ! -f ~/lib/unitth/unitth.jar ]
+        then
+          mkdir -p ~/lib
+          wget http://downloads.sourceforge.net/project/junitth/unitth/unitth-1.3.1/unitth_1_3_1.zip \
+            -O ~/lib/unitth_1_3_1.zip
+          unzip ~/lib/unitth_1_3_1.zip -d ~/lib
+        fi
+    - pip install -r tests/requirements.txt
+    - pip install -r docs/requirements.txt
+test:
+  pre:
+    # create folders for artifacts
+    - mkdir -p $CIRCLE_TEST_REPORTS/nose
+    - mkdir -p $CIRCLE_ARTIFACTS    
+  override:
+    # run tests
+    - |
+        nosetests tests \
+          --with-xunit --xunit-file=$CIRCLE_TEST_REPORTS/nose.xml \
+          --with-coverage --cover-package=wc
+
+  post:
+    ##### test reports
+    - mkdir -p tests/reports/nose
+    - mkdir -p tests/reports/unitth
+    - mkdir -p tests/reports/html
+    - cp $CIRCLE_TEST_REPORTS/nose.xml tests/reports/nose/$CIRCLE_BUILD_NUM.xml
+
+    #copy test history from lab server
+    - |
+        lftp sftp://karrlab_code:XMPJFSeG@code.karrlab.org \
+          -e "
+            mirror /home/karrlab_code/code.karrlab.org/$CIRCLE_PROJECT_REPONAME/tests/nose tests/reports/nose;
+            bye;
+          "
+
+    # generate test reports that are readable UnitTH
+    - |
+        for report_path in tests/reports/nose/*.xml
+        do
+          report_base_name=${report_path##*/}
+          report_file_name=${report_base_name%.xml}
+          nose2unitth tests/reports/nose/$report_base_name tests/reports/unitth/$report_file_name/
+          junit2html tests/reports/nose/$report_base_name tests/reports/unitth/$report_file_name/index.html
+        done
+
+    # generate report of test history
+    - |
+        java \
+          -Dunitth.generate.exectimegraphs=true \
+          -Dunitth.xml.report.filter= \
+          -Dunitth.html.report.path=. \
+          -Dunitth.report.dir=tests/reports/html \
+          -jar ~/lib/unitth/unitth.jar tests/reports/unitth/*
+
+    #copy test history to lab server
+    - |
+        lftp sftp://karrlab_code:XMPJFSeG@code.karrlab.org \
+          -e "
+            put -O /home/karrlab_code/code.karrlab.org/$CIRCLE_PROJECT_REPONAME/tests/nose tests/reports/nose/$CIRCLE_BUILD_NUM.xml;
+            mirror -e -R tests/reports/unitth/$CIRCLE_BUILD_NUM /home/karrlab_code/code.karrlab.org/$CIRCLE_PROJECT_REPONAME/tests/unitth/$CIRCLE_BUILD_NUM; 
+            mirror -e -R tests/reports/html /home/karrlab_code/code.karrlab.org/$CIRCLE_PROJECT_REPONAME/tests/html;
+            bye;
+          "
+
+    ##### coverage
+    # copy coverage report to artifacts directory
+    - cp .coverage $CIRCLE_ARTIFACTS
+
+    # post coverage report to coveralls
+    - coveralls
+
+    # post covergage report to lab server
+    - coverage html -d tests/reports/coverage
+    - |
+        lftp sftp://karrlab_code:XMPJFSeG@code.karrlab.org \
+          -e "
+            mirror -R tests/reports/coverage /home/karrlab_code/code.karrlab.org/$CIRCLE_PROJECT_REPONAME/tests/coverage;
+            bye;
+          "
+
+    ##### documentation
+    # generate documentation
+    - mkdir -p docs/static
+    - sphinx-apidoc -f -o docs/source/ wc
+    - make -C docs/ html
+
+    # copy documentation to lab server
+    - |
+        lftp sftp://karrlab_code:XMPJFSeG@code.karrlab.org \
+          -e "
+            mirror -R docs/build/html /home/karrlab_code/code.karrlab.org/$CIRCLE_PROJECT_REPONAME/docs;
+            bye;
+          "