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Minor documentation edit
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YinHoon committed Feb 10, 2020
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Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions wc_model_gen/eukaryote/metabolism.py
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Expand Up @@ -21,16 +21,16 @@ class MetabolismSubmodelGenerator(wc_model_gen.SubmodelGenerator):
Options:
* recycled_metabolites (:obj:`dict`): a dictionary with species IDs of metabolites
to be recycled as keys and recycled amounts as values
to be recycled as keys and recycled amounts in copy number as values
* carbohydrate_components (:obj:`dict`): a dictionary with species IDs of carbohydrate
metabolite components as keys and the cellular amount per cell as values
metabolite components as keys and the cellular amount in copy number per cell as values
* lipid_components (:obj:`dict`): a dictionary with species IDs of lipid
metabolite components as keys and the cellular amount per cell as values
* atp_production (:obj:`float`): ATP requirement in copy number per second;
metabolite components as keys and the cellular amount in copy number per cell as values
* atp_production (:obj:`float`): ATP requirement in copy number per cell cycle per cell;
if not provided, it will be calculated from other generated submodels
* amino_acid_ids (:obj:`list`): amino acid metabolite ids
* media_fluxes(:obj:`dict`): dictionary with reaction ids as keys and tuples of
the lower and upper bounds based on measured fluxes (per second) as values
the lower and upper bounds based on measured fluxes (copy number per second) as values
* exchange_reactions (:obj:`list`): IDs of exchange/demand/sink reactions
* scale_factor (:obj:`float`): scaling factor multiplied by the reaction bounds during
calibration; the default value is 1.0
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