Add the expected but unlikely base pairings to the codon-anticodon re…

…cognition rules
KarrLab · Mar 16, 2020 · 54f74a9 · 54f74a9
1 parent a7862c5
commit 54f74a9
Showing 1 changed file with 7 additions and 1 deletion.
diff --git a/wc_model_gen/eukaryote/translation_translocation.py b/wc_model_gen/eukaryote/translation_translocation.py
@@ -73,7 +73,13 @@
     'GCC': ['GGT', 'GGC'],
     'TCC': ['GGA', 'GGG'],
     'CCC': ['GGG'],
-    'TCA': ['TGA'], #selenocysteine        
+    'TCA': ['TGA'], #selenocysteine
+    'AAA': ['TTT'], #natural pairing but unlikely according to the rule
+    'ATA': ['TAT'], #natural pairing but unlikely according to the rule
+    'ATG': ['CAT'], #natural pairing but unlikely according to the rule
+    'ATT': ['AAT'], #natural pairing but unlikely according to the rule
+    'ACT': ['AGT'], #natural pairing but unlikely according to the rule
+    'ATC': ['GAT'], #natural pairing but unlikely according to the rule        
 }
 
 class TranslationTranslocationSubmodelGenerator(wc_model_gen.SubmodelGenerator):