Removed tests for rate laws for now

KarrLab · Aug 2, 2018 · d8462fd · d8462fd
1 parent 5a197ca
commit d8462fd
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Showing 3 changed files with 13 additions and 11 deletions.
diff --git a/tests/prokaryote/test_rna_degradation.py b/tests/prokaryote/test_rna_degradation.py
@@ -94,12 +94,12 @@ def test(self):
             + submodel.reactions[0].participants.get_one(species=h).coefficient,
             rnas[0].get_len() - 1)
 
-       """ # check rate laws
-        deg_rnase = model.observables.get_one(id='deg_rnase_obs')
-        deg_avg_conc = 5000/scipy.constants.Avogadro / cytosol.initial_volume
-        for rna, rxn in zip(rnas, submodel.reactions):
-            self.assertEqual(len(rxn.rate_laws), 1)
-            rl = rxn.rate_laws[0]
-            self.assertEqual(rl.direction.name, 'forward')
-            self.assertEqual(rl.k_m, deg_avg_conc)
-            self.assertEqual(rl.k_cat, 2 * numpy.log(2) / rna.half_life)"""
+    """ # check rate laws
+     deg_rnase = model.observables.get_one(id='deg_rnase_obs')
+     deg_avg_conc = 5000/scipy.constants.Avogadro / cytosol.initial_volume
+     for rna, rxn in zip(rnas, submodel.reactions):
+         self.assertEqual(len(rxn.rate_laws), 1)
+         rl = rxn.rate_laws[0]
+         self.assertEqual(rl.direction.name, 'forward')
+         self.assertEqual(rl.k_m, deg_avg_conc)
+         self.assertEqual(rl.k_cat, 2 * numpy.log(2) / rna.half_life)"""
diff --git a/tests/prokaryote/test_transcription.py b/tests/prokaryote/test_transcription.py
@@ -99,7 +99,7 @@ def test(self):
             + submodel.reactions[0].participants.get_one(species=h).coefficient,
             -(rnas[0].get_len() - 1))
 
-       """ rna_poly = model.observables.get_one(
+        """ rna_poly = model.observables.get_one(
             id='rna_poly_obs')
         # http://bionumbers.hms.harvard.edu/bionumber.aspx?s=n&v=2&id=106199
         poly_avg_conc = 3000/scipy.constants.Avogadro / cytosol.initial_volume

diff --git a/tests/prokaryote/test_translation.py b/tests/prokaryote/test_translation.py
@@ -110,7 +110,9 @@ def test(self):
                     if participant.species.species_type.id == prot.id+'_att':
                         self.assertEqual(participant.coefficient, -1)
 
-   """     # check rate laws
+                        """     
+                        # check rate laws
+
         for rxn in submodel.reactions:
             self.assertEqual(len(rxn.rate_laws), 1)
             rl = rxn.rate_laws[0]