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convert xml failed #1
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Did you follow the guidelines and place the file into the right place:
you can try to run the command below:
to see whether the python script is executable. |
Thanks for the teacher's quick reply. The annotation has been successfully modified. Thank you very much
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主题: Re: [KennthShang/PhaBOX] convert xml failed (Issue #1)
Did you follow the guidelines and place the file into the right place:
# move the script to where the conda located cp blastxml_to_tabular.py {path_to_conda}/envs/phabox/bin/blastxml_to_tabular.py chmod 777 {path_to_conda}/envs/phabox/bin/blastxml_to_tabular.py
you can try to run the command below:
blastxml_to_tabular.py
to see whether the python script is executable.
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Hello, teacher, when I run the GitHub command, the following error occurs and I can't find the relevant solution on the Internet, so please help to check it, thank you
nohup python /data/software/PhaBOX-main/main.py --contigs final-viral-combined-for-dramv.fa --threads 8 --len 1000 --rootpth simple_test --out out/ --dbdir database/ --parampth parameters/ &
blastxml_to_tabular.py -o simple_test/midfolder//phamer_results.tab -c qseqid,sseqid,pident,length,mismatch,gapopen,qstart,qend,sstart,send,evalue simple_test/midfolder//phamer_results.xml
convert xml failed
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