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ah haaa - I needed to say the cells were slides
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@KirstieJane
KirstieJane committed Sep 6, 2016
1 parent e9ca7f5 commit 69cb275
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80 changes: 66 additions & 14 deletions PRESENTATIONS/.ipynb_checkpoints/integrating-aibs-with-mri-checkpoint.ipynb
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Expand Up @@ -45,7 +45,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## MRI results\n",
"\n",
Expand All @@ -55,7 +59,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Wanted to know how these changes related to gene expression\n",
"\n",
Expand All @@ -66,7 +74,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Downloaded data from 6 brains from the Allen Brain Institute website\n",
"\n",
Expand All @@ -76,7 +88,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"### Each brain has 5 files:\n",
"* **MicroarrayExpression.csv**\n",
Expand All @@ -95,7 +111,10 @@
"cell_type": "code",
"execution_count": 1,
"metadata": {
"collapsed": false
"collapsed": false,
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
Expand Down Expand Up @@ -296,7 +315,10 @@
"cell_type": "code",
"execution_count": 2,
"metadata": {
"collapsed": false
"collapsed": false,
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
Expand Down Expand Up @@ -443,7 +465,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Match up the MRI regions with the AIBS data\n",
"\n",
Expand All @@ -463,7 +489,10 @@
"cell_type": "code",
"execution_count": 3,
"metadata": {
"collapsed": false
"collapsed": false,
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
Expand Down Expand Up @@ -660,7 +689,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Woah that's a lot of data\n",
"\n",
Expand All @@ -680,7 +713,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Gene Ontology analyses\n",
"\n",
Expand All @@ -694,7 +731,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Results - structure\n",
"\n",
Expand All @@ -703,7 +744,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Results - function\n",
"\n",
Expand All @@ -713,7 +758,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## All the code and is available at GitHub:\n",
"\n",
Expand All @@ -723,7 +772,10 @@
{
"cell_type": "markdown",
"metadata": {
"collapsed": true
"collapsed": true,
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"# Thank you!"
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80 changes: 66 additions & 14 deletions PRESENTATIONS/integrating-aibs-with-mri.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -45,7 +45,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## MRI results\n",
"\n",
Expand All @@ -55,7 +59,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Wanted to know how these changes related to gene expression\n",
"\n",
Expand All @@ -66,7 +74,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Downloaded data from 6 brains from the Allen Brain Institute website\n",
"\n",
Expand All @@ -76,7 +88,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"### Each brain has 5 files:\n",
"* **MicroarrayExpression.csv**\n",
Expand All @@ -95,7 +111,10 @@
"cell_type": "code",
"execution_count": 1,
"metadata": {
"collapsed": false
"collapsed": false,
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
Expand Down Expand Up @@ -296,7 +315,10 @@
"cell_type": "code",
"execution_count": 2,
"metadata": {
"collapsed": false
"collapsed": false,
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
Expand Down Expand Up @@ -443,7 +465,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Match up the MRI regions with the AIBS data\n",
"\n",
Expand All @@ -463,7 +489,10 @@
"cell_type": "code",
"execution_count": 3,
"metadata": {
"collapsed": false
"collapsed": false,
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
Expand Down Expand Up @@ -660,7 +689,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Woah that's a lot of data\n",
"\n",
Expand All @@ -680,7 +713,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Gene Ontology analyses\n",
"\n",
Expand All @@ -694,7 +731,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Results - structure\n",
"\n",
Expand All @@ -703,7 +744,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## Results - function\n",
"\n",
Expand All @@ -713,7 +758,11 @@
},
{
"cell_type": "markdown",
"metadata": {},
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"## All the code and is available at GitHub:\n",
"\n",
Expand All @@ -723,7 +772,10 @@
{
"cell_type": "markdown",
"metadata": {
"collapsed": true
"collapsed": true,
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"# Thank you!"
Expand Down
193 changes: 107 additions & 86 deletions PRESENTATIONS/integrating-aibs-with-mri.slides.html
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