@KnowEnG

KnowEnG

Knowledge Engine for Genomic Analysis and Visualization

  • Identifies 'phenotype-relevant' transcriptional regulatory networks

    Python 3 Updated Aug 20, 2018
  • Clusters the sample-based columns of a spreadsheet whose rows correspond to genes

    Python 8 Updated Aug 18, 2018
  • Download a subnetwork from the KnowEnG Knowledge Network

    Common Workflow Language 2 Updated Aug 18, 2018
  • Maps gene-label row names of a spreadsheet to Ensembl names and checks data formats

    Python 7 Updated Aug 18, 2018
  • Fetch and parse source files to construct KnowEnG Knowledge Network

    Python Updated Aug 17, 2018
  • Python Updated Aug 17, 2018
  • Clusters columns of any data frame

    Python 2 9 Updated Aug 16, 2018
  • Maps names to entity IDs in the KnowEnG Knowledge Network

    Python 1 Updated Aug 8, 2018
  • An interactive learning resource for next-generation sequencing (NGS) techniques

    JavaScript 8 1 MIT Updated Aug 3, 2018
  • Network-based prioritization of genes associated with phenotypes

    Python 1 7 Updated Aug 2, 2018
  • Python scripts to support KnowEnG pipelines

    Python 6 Updated Aug 1, 2018
  • Apply various transformations (transpose, merge, ....) on one or more DataFrames

    Jupyter Notebook Updated Jul 30, 2018
  • A Teaching Engine for Genomics

    JavaScript 5 Artistic-2.0 Updated Jul 23, 2018
  • Setup resources and start KN_Builder

    Makefile 1 Updated Jul 14, 2018
  • CWL for KnowEnG pipelines for cwltool and CGC

    Common Workflow Language Updated Jul 6, 2018
  • InPheRNo (Inference of Phenotype-relevant Regulatory Networks) is a computational tool to reconstruct phenotype-relevant transcriptional regulatory networks (TRNs) using transcriptomic and phenotypic data.

    Python Updated Jul 6, 2018
  • Sample files and readmes for analytics pipelines on KnowEnG platform

    Updated Jun 12, 2018
  • This is the simplified version of InPheRNo

    Python Updated Jun 7, 2018
  • Gene signature similarity analysis

    Python 1 9 Updated May 31, 2018
  • Educational web resource for clustering and visualizing high-dimensional data

    R 3 MIT Updated Mar 13, 2018
  • Probabilistic Gene Expression in the Middle Analysis

    C++ 1 Updated Mar 13, 2018
  • Ranks a user supplied gene set against KnowEnG's gene sets collection

    Python 1 8 Updated Mar 12, 2018
  • General purpose features prioritization pipeline

    Python 3 Updated Feb 20, 2018
  • Regression to infer an 'omic'-phenotype association

    Python 6 Updated Feb 19, 2018
  • SigMat: A Classification Scheme for Gene Signature Matching

    Jupyter Notebook 2 MIT Updated Feb 13, 2018
  • Prioritization of Genes Enhanced with Network Information

    Python 3 2 Updated Dec 12, 2017
  • Discriminative Random Walk with Restart

    R 3 2 Updated Dec 12, 2017
  • Software to accompany ISMB2015 paper

    Matlab 2 Updated Dec 12, 2017
  • check-results tool for cwl-gene-prioritization

    Python Updated Dec 6, 2017
  • CWL descriptions for the gene prioritization workflow

    Updated Dec 6, 2017