Merge pull request #88 from deepakunni3/fix-coord-transform

Fix URL for SciBite CORD-19 annotated dataset
Knowledge-Graph-Hub · Apr 10, 2020 · 2e2fb44 · 2e2fb44
2 parents ad148e1 + 0e58007
commit 2e2fb44
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diff --git a/download.yaml b/download.yaml
@@ -74,8 +74,8 @@
 # SciBite CORD-19 annotations v1.2
 #
 -
-  url: http://idg.berkeleybop.io/CORD-19_1_2.zip
-  local_name: CORD-19_1_2.zip
+  url: https://s3.eu-west-2.amazonaws.com/scibite.covid19data/CORD19/annotated-cord19/CORD-19_1_3.zip
+  local_name: CORD-19_1_3.zip
 
 # SciBite CORD-19 entity co-occurrences v1.0
 -

diff --git a/kg_covid_19/transform_utils/scibite_cord/scibite_cord.py b/kg_covid_19/transform_utils/scibite_cord/scibite_cord.py
@@ -34,7 +34,7 @@ def run(self, data_files: List = None) -> None:
         """
         if not data_files:
             data_files = list()
-            data_files.append(os.path.join(self.input_base_dir, "CORD-19_1_2.zip"))
+            data_files.append(os.path.join(self.input_base_dir, "CORD-19_1_3.zip"))
             data_files.append(os.path.join(self.input_base_dir, "cv19_scc.zip"))
 
         self.node_header = ['id', 'name', 'category', 'description']