This is KG-Hub, a platform that provides software development patterns for the standardized construction, exchange, and reuse of knowledge graphs.
Features include:
- a simple, modular extract-transform-load (ETL) pattern for ingest of upstream data in a BioLink Model compliant manner
- cached downloads of graph-shaped data,
- versioned and automatically updated KG builds,
- and the KG-Registry, a listing of KGs and their source components.
See our pinned repositories below for quick access to our main code bases, or use the search bar to find a specific code repository.
- KG-Hub Documentation
- KG-Hub files for download
- KG Registry - a site describing community KGs and their components
- KG Cookiecutter Template - use this to start your own KG
- Caufield JH, Putman T, Schaper K, Unni DR, Hegde H, Callahan TJ, Cappelletti L, Moxon SAT, Ravanmehr V, Carbon S, Chan LE, Cortes K, Shefchek KA, Elsarboukh G, Balhoff JP, Fontana T, Matentzoglu N, Bruskiewich RM, Thessen AE, Harris NL, Munoz-Torres MC, Haendel MA, Robinson PN, Joachimiak MP, Mungall CJ, Reese JT. KG-Hub -- Building and Exchanging Biological Knowledge Graphs. arXiv [q-bio.QM]. 2023. http://arxiv.org/abs/2302.10800
