Merged nodes.tsv has 3 lines with too many tabs

[justaddcoffee]

(venv) ~/PycharmProjects/kg-emerging-viruses/data/merged *add_pubmed_info $ awk '{print gsub(/\t/,"")}' merged-kg_nodes.tsv | sort | uniq -c
466916 11
   1 175430
   1 85874
   1 88892

[justaddcoffee]

This issue seems to arise in the ontology ingest, for example this line with thousands of tabs is emitted from the GO-plus transform:

biolink:AnatomicalEntity	An atrioventricular valve that is part of the outflow part of the right atrium.	UBERON:0002134	http://purl.obolibrary.org/obo/UBERON_0002134	tricuspid valve	valvula tricuspidalis|valva atrioventricularis dextra|right atrioventricular valve
		http://purl.obolibrary.org/obo/CHEBI_77148			
		http://purl.obolibrary.org/obo/GOCHE_35610			
		http://purl.obolibrary.org/obo/UBERON_0000004 [GOES ON FOR QUITE A WHILE...]

@deepakunni3 could we chat about this when you get a chance? I was going to make a PR in kg-covid-19, but it looks like this TSV is made in KGX, so might need a PR there instead...

[justaddcoffee]

Still seeing this after merging #207 to hex-ify tabs in ingested data and after @deepakunni3 updated KGX to deal with internal \"s

$ wget http://kg-hub.berkeleybop.io/kg-covid-19.tar.gz
$ tar -xvzf kg-covid-19.tar.gz
$ awk '{print gsub(/\t/,"")}' merged-kg_nodes.tsv | sort | uniq -c
466916 11
   1 175430
   1 85874
   1 88892

[deepakunni3]

Somehow I am not seeing this.

awk '{print gsub(/\t/,"")}' merged-kg_nodes.tsv | sort | uniq -c
465505 11

[justaddcoffee]

You're right Deepak